View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10619_low_18 (Length: 247)
Name: NF10619_low_18
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10619_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 48894130 - 48893890
Alignment:
| Q |
1 |
ttcctgcaggatccactgcatctattccaaatggtggtattgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatcc |
100 |
Q |
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| T |
48894130 |
ttcctgcaggatccactgcatctattccaaatggtggttttgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatcc |
48894031 |
T |
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| Q |
101 |
atcttcattgatgaacatgcaggcaaggcatgctatgcagcaacagcctcagatgatgtatcacaggtcaccttttgttcctcctaatactggctatcat |
200 |
Q |
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| T |
48894030 |
atcttcattgatgaacatgcaggcaaggcatgctatgcagcaacagcctcagatgatgtatcacaggtcaccttttgttcctcctaatactggctatcat |
48893931 |
T |
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| Q |
201 |
tacaattataataactacattcctgcaaattactcctatgc |
241 |
Q |
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| T |
48893930 |
tacaattataataactacattcctgcaaattactcctatgc |
48893890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 24743001 - 24742764
Alignment:
| Q |
5 |
tgcaggatccactgcatctattccaaatggtggtattgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatct |
104 |
Q |
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| T |
24743001 |
tgcaggatcctttgcagctattccaaatggtggttttgttactggccaatatccatcatctatgctaatgaacatgaatggtttcaataaccatccattt |
24742902 |
T |
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| Q |
105 |
tcattgatgaacatgcaggcaaggcatgctatgcagcaacagcctcagatgatgtatcacaggtcacc--ttttgttcctcctaatactggc---tatca |
199 |
Q |
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| T |
24742901 |
tcattgatgaacatgctggcaaggcatgctatgcagcaacagcctcagatgatgtattacacatcaccttttttgttcctcctaatactggctattatta |
24742802 |
T |
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| Q |
200 |
ttacaattataataactacattcctgcaaattactcct |
237 |
Q |
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| T |
24742801 |
ttacaattataataactacattcatgcaaattactcct |
24742764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 10654674 - 10654786
Alignment:
| Q |
32 |
tggtggtattgttactggccagtatccaccatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgcaggcaaggcat |
131 |
Q |
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| T |
10654674 |
tggtggttttgttactggccaatatccatcatctatgttaatgaacatgaatggtttcaataaccatccatcttcattgatgaacatgctggcaaggcat |
10654773 |
T |
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| Q |
132 |
gctatgcagcaac |
144 |
Q |
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| T |
10654774 |
gctatgcagcaac |
10654786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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