View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10619_low_20 (Length: 241)

Name: NF10619_low_20
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10619_low_20
NF10619_low_20
[»] chr8 (15 HSPs)
chr8 (19-128)||(33838005-33838114)
chr8 (151-239)||(19147602-19147690)
chr8 (159-241)||(26053596-26053678)
chr8 (170-241)||(42475718-42475789)
chr8 (151-233)||(4885470-4885552)
chr8 (160-241)||(10226799-10226881)
chr8 (151-233)||(21184068-21184150)
chr8 (169-239)||(33691658-33691728)
chr8 (169-233)||(27114944-27115008)
chr8 (160-224)||(33238103-33238167)
chr8 (182-241)||(28733984-28734043)
chr8 (169-239)||(10903046-10903116)
chr8 (179-224)||(13947149-13947194)
chr8 (169-234)||(40347009-40347074)
chr8 (154-233)||(40614683-40614762)
[»] chr6 (7 HSPs)
chr6 (151-236)||(27596535-27596620)
chr6 (159-241)||(8636143-8636225)
chr6 (169-239)||(33702618-33702688)
chr6 (169-233)||(12356342-12356406)
chr6 (159-241)||(23111363-23111440)
chr6 (169-239)||(29092773-29092843)
chr6 (169-215)||(29397942-29397988)
[»] chr7 (10 HSPs)
chr7 (151-241)||(33382346-33382436)
chr7 (151-241)||(32745933-32746023)
chr7 (152-237)||(40474432-40474517)
chr7 (151-233)||(46400106-46400188)
chr7 (152-241)||(28681906-28681992)
chr7 (151-233)||(31845185-31845267)
chr7 (159-241)||(11353729-11353810)
chr7 (169-239)||(45920064-45920134)
chr7 (159-230)||(32030317-32030388)
chr7 (171-236)||(45067543-45067608)
[»] chr5 (9 HSPs)
chr5 (151-241)||(28747599-28747689)
chr5 (151-238)||(32955861-32955948)
chr5 (151-239)||(26818356-26818444)
chr5 (169-239)||(3523213-3523283)
chr5 (178-239)||(31069193-31069254)
chr5 (178-234)||(33062040-33062096)
chr5 (151-221)||(8465186-8465256)
chr5 (179-233)||(31508461-31508515)
chr5 (159-232)||(42545710-42545778)
[»] chr1 (12 HSPs)
chr1 (151-241)||(15649100-15649190)
chr1 (165-241)||(32132013-32132089)
chr1 (151-239)||(790147-790235)
chr1 (151-234)||(17305044-17305127)
chr1 (151-239)||(51236294-51236382)
chr1 (169-239)||(24186710-24186780)
chr1 (179-233)||(24918874-24918928)
chr1 (169-239)||(34387555-34387625)
chr1 (159-212)||(33376601-33376654)
chr1 (169-239)||(27842558-27842628)
chr1 (151-241)||(32000633-32000723)
chr1 (169-239)||(34393683-34393753)
[»] chr4 (15 HSPs)
chr4 (151-241)||(26463921-26464011)
chr4 (151-241)||(35653290-35653380)
chr4 (151-241)||(23516160-23516250)
chr4 (151-241)||(38935820-38935910)
chr4 (151-233)||(23393144-23393226)
chr4 (151-214)||(49706384-49706447)
chr4 (151-239)||(46171692-46171780)
chr4 (151-233)||(9117307-9117389)
chr4 (169-234)||(27510835-27510900)
chr4 (169-239)||(12389225-12389295)
chr4 (169-237)||(31879528-31879596)
chr4 (169-233)||(48995764-48995828)
chr4 (169-237)||(6582393-6582461)
chr4 (169-233)||(16048074-16048138)
chr4 (178-241)||(2736729-2736792)
[»] chr2 (4 HSPs)
chr2 (151-241)||(9623917-9624006)
chr2 (151-224)||(43177171-43177244)
chr2 (151-239)||(2153988-2154071)
chr2 (169-239)||(31365550-31365620)
[»] chr3 (16 HSPs)
chr3 (151-240)||(18021744-18021833)
chr3 (151-241)||(44773937-44774027)
chr3 (149-233)||(40292891-40292975)
chr3 (151-233)||(13840796-13840878)
chr3 (160-224)||(44416396-44416460)
chr3 (171-241)||(32863566-32863636)
chr3 (160-233)||(33639403-33639476)
chr3 (151-239)||(10222998-10223086)
chr3 (178-241)||(34122365-34122428)
chr3 (157-223)||(5293235-5293301)
chr3 (151-239)||(50309060-50309148)
chr3 (153-227)||(8600202-8600276)
chr3 (159-241)||(40929383-40929465)
chr3 (172-241)||(50303218-50303287)
chr3 (181-233)||(25639412-25639464)
chr3 (155-222)||(20254758-20254825)
[»] scaffold0488 (1 HSPs)
scaffold0488 (151-239)||(7364-7452)
[»] scaffold0064 (1 HSPs)
scaffold0064 (169-241)||(54069-54141)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 33838114 - 33838005
Alignment:
Q  19 atcacattgtctaaaaatctgcttcctcatccacgttacacctcttgaatttgtttctccctagttgaaactttaaaccataaaaataagactcgtatgc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33838114 atcacattgtctaaaaatctgcttcctcatccacgttacaccttttgaatttgtttctccctagttgaaactttaaaccataaaaataagactcgtatgc 33838015  T
Q  119 atatataata 128  Q
    ||||||||||    
T  33838014 atatataata 33838005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 19147690 - 19147602
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    ||||||| ||||||||||||||||||  |||| ||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||    
T  19147690 aaatattggttttggttcggttcggtttggttcataggtaagaaaatggttaaccgaaccataactttggttcagttcggttagctcca 19147602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 26053596 - 26053678
Alignment:
Q  159 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||||  |||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||| ||||||    
T  26053596 gttttggttcggttcggttaggttaataggcaagcaaacggttaaccgaaccataactttggttcaattcggttagttccaaa 26053678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 42475789 - 42475718
Alignment:
Q  170 gttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  42475789 gttcggttcggttaataggtatgcaaatggttaaccgaaccataactttggttcaattcggttagttccaaa 42475718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 4885470 - 4885552
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || |||||    
T  4885470 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggtta 4885552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 10226881 - 10226799
Alignment:
Q  160 ttttggttc-ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||| |||||||| ||||||||||| ||| ||| |||||||| |||||||||||||||||| ||||||||| ||||||    
T  10226881 ttttggttctggttcggttcggttaataggcaagaaaacggttaaccgaaccataattttggttcagttcggttagttccaaa 10226799  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 21184068 - 21184150
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||||||||||||||||| ||| ||||  ||| |||||||||||||||||| |||||||| ||||||||| || |||||    
T  21184068 aaatatttgttttggttcggtttggttcggtatataagtaagcaaatggttaaccgaaccataactttggttcagtttggtta 21184150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 33691658 - 33691728
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  33691658 ggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 33691728  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 27115008 - 27114944
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||| ||||||||||| ||| |||||||||||| |||||||| ||||||||| ||||||||    
T  27115008 ggttcggttcggttaatagggaagtaaatggttaaccgaaccataactttggttcagttcggtta 27114944  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 33238103 - 33238167
Alignment:
Q  160 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttca 224  Q
    ||||||||||||||||| ||||||||| | ||||||| |||||||  |||||||| |||||||||    
T  33238103 ttttggttcggttcggttcggttaatatgcaagcaaacggttaactgaaccataactttggttca 33238167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 28733984 - 28734043
Alignment:
Q  182 taataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| | ||||||||| ||||||    
T  28733984 taataggcaagcaaacggttaaccaaaccataactttggtttagttcggttagttccaaa 28734043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 10903116 - 10903046
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||| | ||||| ||| ||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  10903116 ggttcgattcggttcatatgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 10903046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 13947194 - 13947149
Alignment:
Q  179 ggttaataggtaagcaaatggttaaccaaaccataattttggttca 224  Q
    |||||||| |||||||||||||||||| |||||||| |||||||||    
T  13947194 ggttaatatgtaagcaaatggttaaccgaaccataactttggttca 13947149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 40347074 - 40347009
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttag 234  Q
    |||||||| ||||| ||||||||||||| |||||| |||| ||||| | ||||||| |||||||||    
T  40347074 ggttcggttcggttcataggtaagcaaacggttaatcaaatcataactctggttcagttcggttag 40347009  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 40614762 - 40614683
Alignment:
Q  154 tatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||| || ||| ||||| |  ||||||||| |||| |||||||||||| |||||||| ||||||||| || |||||    
T  40614762 tatttgttgtgattcagttcgatttggttaatagataagtaaatggttaaccgaaccataactttggttcagtttggtta 40614683  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 27596620 - 27596535
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagct 236  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27596620 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataattttggttcagttcggttagct 27596535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 241
Target Start/End: Original strand, 8636143 - 8636225
Alignment:
Q  159 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||| ||||| || ||||||||||||||||||| |||||||| | |||||| |||||||||  |||||||| ||||||    
T  8636143 gttttggtttggttcagttcggttaataggtaagcaaacggttaaccgagccataactttggttcagctcggttagttccaaa 8636225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 33702688 - 33702618
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| |||||  |||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||    
T  33702688 ggttcggttcggttcttaggtaagaaaatggttaaccgaaccataactttggttcagttcggttagctcca 33702618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 12356342 - 12356406
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||| |||| |||||  |||||||  |||||||||||||||| ||||||||||||||||||    
T  12356342 ggttcggttcggtcaatagccaagcaaactgttaaccaaaccataactttggttcaattcggtta 12356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 23111440 - 23111363
Alignment:
Q  159 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||     ||||||||||  ||||||||| |||||| |||||||| |||| |||| ||||||||| ||||||    
T  23111440 gttttggttcggtt-----cggttaatagacaagcaaatgattaaccgaaccataactttgattcagttcggttagttccaaa 23111363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 29092773 - 29092843
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    ||||||||  |||| |||| |||| ||| ||||| || |||||||| ||||||||| ||||||||||||||    
T  29092773 ggttcggtttggttcatagataagaaaacggttatccgaaccataactttggttcagttcggttagctcca 29092843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 29397942 - 29397988
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataat 215  Q
    ||||||||  ||||||||||||| ||||||||||||| |||||||||    
T  29397942 ggttcggtttggttaataggtaaacaaatggttaaccgaaccataat 29397988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 33382346 - 33382436
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||    
T  33382346 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggttagcttcaaa 33382436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 32746023 - 32745933
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  32746023 aaatatttgttttggttcggttcggtatggttaataggtaagtaaatggttagccaaaccataactttggttcagttcggttagctccaaa 32745933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 40474517 - 40474432
Alignment:
Q  152 aatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctc 237  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  40474517 aatatttgttttggttcggttcggtatggttaataagtaagcaaatggttaaccaaaccataactttggttcagttcggttagctc 40474432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 46400188 - 46400106
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||||||||||||||| |||||  ||||||||||||||||||||||||||| |||||||| ||||||||| || |||||    
T  46400188 aaatatttgttttggttcggatcggtttggttaataggtaagcaaatggttaaccgaaccataactttggttcagtttggtta 46400106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 28681992 - 28681906
Alignment:
Q  152 aatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||| | |   || |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  28681992 aatatttgttttggttcagct---tatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggttagatccaaa 28681906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 31845267 - 31845185
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||||||||| |||||||| ||  ||||||||||||||||||||||||||| |||||||| ||||||||| || |||||    
T  31845267 aaatatttgttttgcttcggttcagtttggttaataggtaagcaaatggttaaccgaaccataactttggttcagtttggtta 31845185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 11353810 - 11353729
Alignment:
Q  159 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    |||||||||||||| ||| ||||||||||| ||||||| |||||||| |||||||| ||||||||| ||||||||| ||||||    
T  11353810 gttttggttcggtt-ggttcggttaataggcaagcaaacggttaaccgaaccataactttggttcagttcggttagttccaaa 11353729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 45920064 - 45920134
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  45920064 ggttcggttcggttcataggtaagaaaacggttaacctaaccataactttggttcagttcggttagctcca 45920134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 32030317 - 32030388
Alignment:
Q  159 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcgg 230  Q
    ||||||||||||||||||  || ||||||||||||||| |||||| | |||||||| ||||||||| |||||    
T  32030317 gttttggttcggttcggtttggctaataggtaagcaaacggttaatcgaaccataactttggttcagttcgg 32030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 45067543 - 45067608
Alignment:
Q  171 ttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagct 236  Q
    |||||| ||||| ||| ||||| ||| |||||||| |||||||| ||||||||| |||||||||||    
T  45067543 ttcggttcggttcatatgtaagaaaacggttaaccgaaccataactttggttcagttcggttagct 45067608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 28747689 - 28747599
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  28747689 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttagttcagttcggttagctccaaa 28747599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 32955948 - 32955861
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcc 238  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |||| |||||||||||||    
T  32955948 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatgattaaccaaaccataactttgattcagttcggttagctcc 32955861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 26818356 - 26818444
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    ||||||| |||||||||||||||| |  ||||  ||| |||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  26818356 aaatattggttttggttcggttcgatttggttcttagataagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 26818444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 3523283 - 3523213
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  3523283 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 3523213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 31069254 - 31069193
Alignment:
Q  178 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    ||||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  31069254 cggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 31069193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 33062040 - 33062096
Alignment:
Q  178 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttag 234  Q
    ||||||||||| |||||||  ||||||| |||||||||||||||||| |||||||||    
T  33062040 cggttaataggcaagcaaacagttaaccgaaccataattttggttcagttcggttag 33062096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 8465256 - 8465186
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggt 221  Q
    |||||||| |||| ||||||||||||  | |||||||||||||||| |||||||| || ||||| ||||||    
T  8465256 aaatatttattttagttcggttcggtttgattaataggtaagcaaacggttaaccgaatcataactttggt 8465186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 31508461 - 31508515
Alignment:
Q  179 ggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    ||||||||||||||||||||||||||  |||||||| ||||||||| || |||||    
T  31508461 ggttaataggtaagcaaatggttaacagaaccataactttggttcagtttggtta 31508515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 42545710 - 42545778
Alignment:
Q  159 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtt 232  Q
    ||||||||||||||     ||||||||| | ||||||| |||||||| |||||||| ||||||||| |||||||    
T  42545710 gttttggttcggtt-----cggttaatatgcaagcaaacggttaaccgaaccataactttggttcagttcggtt 42545778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 15649100 - 15649190
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||    
T  15649100 aaatatttgttttggttcggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagctcggttagctccaaa 15649190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 32132013 - 32132089
Alignment:
Q  165 gttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  32132013 gttcgattcggtatggttaataggtaagcaaatggttaaccaaaccataactttggctcaattcggttagttccaaa 32132089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 790235 - 790147
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| |||||||| |||||    
T  790235 aaatattggttttggttcggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttaactcca 790147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 234
Target Start/End: Original strand, 17305044 - 17305127
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttag 234  Q
    ||||||| ||||||||||||||| || ||||| ||||||||| ||| |||||||| |||||||| ||||||||  |||||||||    
T  17305044 aaatattggttttggttcggttcagttcggttcataggtaagaaaacggttaaccgaaccataactttggttcggttcggttag 17305127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 51236294 - 51236382
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||  ||||||||||||||||| ||||| ||||||||| |||  ||||||| |||||||| ||||||||| || |||||| ||||    
T  51236294 aaatattgattttggttcggttcggttcggttcataggtaagaaaacagttaaccgaaccataactttggttcagtttggttaggtcca 51236382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 24186780 - 24186710
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  24186780 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 24186710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 24918874 - 24918928
Alignment:
Q  179 ggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||||||||||||||||||||||||||||||| |||| |||| || |||||    
T  24918874 ggttaataggtaagcaaatggttaaccaaaccataactttgattcagtttggtta 24918928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 34387555 - 34387625
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  34387555 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 34387625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 33376654 - 33376601
Alignment:
Q  159 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccat 212  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||| ||||||    
T  33376654 gttttggttcggttcggttcggttaataggcaagcaaatgattaaccgaaccat 33376601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 27842558 - 27842628
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| | ||| ||| ||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  27842558 ggttcggttcagttcatacgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 27842628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 32000723 - 32000633
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    |||||||  ||||||||||||| ||| |||||||||||||| |||||| |||| | |||||||| |||| |||| ||| | ||| ||||||    
T  32000723 aaatattgattttggttcggtttggttcggttaataggtaaacaaatgattaatcgaaccataactttgattcagttcagatagttccaaa 32000633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 34393753 - 34393683
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| | ||| ||| ||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  34393753 ggttcggttcagttcatacgtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 34393683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 26464011 - 26463921
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||    
T  26464011 aaatatttgttttggttcggttcggtatgattaataggtaagcaaatggttaaccaaaccataactttggttcagtttggttagctccaaa 26463921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 35653290 - 35653380
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||    
T  35653290 aaatatttgttttggtttggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggttcagttcggatagctccaaa 35653380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 23516250 - 23516160
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  23516250 aaatatttgttttggttcgattcggtatggttaataggtaagaaaatgattaaccaaaccataactttggttcagttcggttagctccaaa 23516160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 38935910 - 38935820
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||    
T  38935910 aaatatttgttttggtttggttcggtatggttaataggtaagcaaatggttaaccaaaccataactttggtttagttcagttagctccaaa 38935820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 23393144 - 23393226
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || |||||    
T  23393144 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggtta 23393226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 49706384 - 49706447
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataa 214  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  49706384 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataa 49706447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 46171780 - 46171692
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    ||||||| |||||||||||||||||| || || | ||||||| ||| |||||||| || ||||| ||||||||| ||||||||||||||    
T  46171780 aaatattggttttggttcggttcggttcgattcacaggtaagaaaacggttaaccgaaacataactttggttcagttcggttagctcca 46171692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 9117307 - 9117389
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||||||||||||||| |||||  ||||| || |||| ||||||||||||| |||||||||||| ||||| || |||||    
T  9117307 aaatatttgttttggttcggatcggtttggttactaagtaaacaaatggttaaccgaaccataattttagttcagtttggtta 9117389  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 27510900 - 27510835
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttag 234  Q
    |||||||| ||||||||||| ||||||| |||||||| |||||||| ||||||||| |||||||||    
T  27510900 ggttcggttcggttaataggcaagcaaacggttaaccgaaccataactttggttcagttcggttag 27510835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 12389295 - 12389225
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| ||||| ||||||||| |||  ||||||| |||||||| ||||||||| ||||||||||||||    
T  12389295 ggttcggttcggttcataggtaagaaaacagttaaccgaaccataactttggttcagttcggttagctcca 12389225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 31879528 - 31879596
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctc 237  Q
    |||||||| ||||| ||||||||| ||| |||||| | |||||||| ||||||||| ||||||||||||    
T  31879528 ggttcggttcggttcataggtaagaaaacggttaatcgaaccataactttggttcagttcggttagctc 31879596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 48995828 - 48995764
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||| ||| ||||||||||| ||| |||||||||||| |||||||||||||||||| || |||||    
T  48995828 ggtttggttcggttaataggcaagaaaatggttaaccgaaccataattttggttcagtttggtta 48995764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 6582461 - 6582393
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctc 237  Q
    |||||||| ||||| ||||||| | ||| |||||||| ||| |||| ||||||||| ||||||||||||    
T  6582461 ggttcggttcggttcataggtaggaaaacggttaaccgaactataactttggttcagttcggttagctc 6582393  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 16048074 - 16048138
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||| ||| ||||| ||||| ||| ||| || |||||||||||||| ||||||||||||||||||    
T  16048074 ggtttggttcggttcataggcaaggaaacggataaccaaaccataactttggttcaattcggtta 16048138  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 2736792 - 2736729
Alignment:
Q  178 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||| || ||||  ||||||| |||||||| ||||||||| ||||||||| ||||||    
T  2736792 cggttaataggcaaacaaacagttaaccgaaccataactttggttcagttcggttagttccaaa 2736729  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 9623917 - 9624006
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  9623917 aaatatttgttttggttcggttcgatatggttaataggtaagcaaatggttaaccaaaccataactttggttcaa-tcggttagctccaaa 9624006  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 43177244 - 43177171
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttca 224  Q
    |||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || ||||||    
T  43177244 aaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttca 43177171  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 2153988 - 2154071
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||||||||||||||||||| | |     ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  2153988 aaatatttgttttggttcggttcgattc-----ataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 2154071  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 31365620 - 31365550
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    |||||||| | ||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  31365620 ggttcggttcagttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 31365550  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 18021744 - 18021833
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaa 240  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||||||    
T  18021744 aaatatttgttttggttcggttcggtatggttaataggtaaacaaatggttaaccaaaccataactttggttgagttcggttagctccaa 18021833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 44773937 - 44774027
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    |||||||| |||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||| |||||||| |||||||    
T  44773937 aaatatttattttggttcggttcggtatggttaatagttaagcaaatggttaactaaaccataactttggttcagttcggttaactccaaa 44774027  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 233
Target Start/End: Original strand, 40292891 - 40292975
Alignment:
Q  149 ataaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| || |||||| || |||||    
T  40292891 ataaatatttattttggttcggtttggttcggttaataggtaagcaaatggttaaccgaaccataacttaggttcagtttggtta 40292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 151 - 233
Target Start/End: Complemental strand, 13840878 - 13840796
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||||||||||||||||| ||| |  ||||||||||||| ||||||||||||| |||||||| ||||||||| || |||||    
T  13840878 aaatatttgttttggttcggatcgatttggttaataggtaaacaaatggttaaccgaaccataactttggttcagtttggtta 13840796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 44416396 - 44416460
Alignment:
Q  160 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttca 224  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||||||||||  |||||||||    
T  44416396 ttttggttcggttcggtttggttaataggtaagtaaatggttaaccaaaccatagctttggttca 44416460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 32863566 - 32863636
Alignment:
Q  171 ttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    |||||| |||||||||| || |||||||||||||| |||||||| ||||||||| ||||||||| ||||||    
T  32863566 ttcggttcggttaatagatatgcaaatggttaaccgaaccataactttggttcagttcggttagttccaaa 32863636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 33639403 - 33639476
Alignment:
Q  160 ttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    ||||||||||||||| | ||||||||||| ||||||| |||||| | |||||||| ||||||||| ||||||||    
T  33639403 ttttggttcggttcgattcggttaatagggaagcaaacggttaatcgaaccataactttggttcatttcggtta 33639476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 10222998 - 10223086
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    ||||||| |||||||||||||||| |  ||||  ||| |||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  10222998 aaatattggttttggttcggttcgatttggttcttagataagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 10223086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 34122365 - 34122428
Alignment:
Q  178 cggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| | ||||| ||| ||||||    
T  34122365 cggttaataggtaagcagatggttaaccaaaccataactttggttgagttcggatagttccaaa 34122428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 5293301 - 5293235
Alignment:
Q  157 ttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttc 223  Q
    |||||||| ||||||| |||  ||||||||||||||||||||||||||| |||||||  ||||||||    
T  5293301 ttgttttgattcggtttggtttggttaataggtaagcaaatggttaaccgaaccatagctttggttc 5293235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 50309148 - 50309060
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    ||||||| | |||| ||||||||||| ||||| ||| ||||| ||| |||||||| || ||||| ||||||||| |||| |||||||||    
T  50309148 aaatattgggtttgattcggttcggttcggttcataagtaagaaaacggttaaccgaaacataactttggttcagttcgattagctcca 50309060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 8600276 - 8600202
Alignment:
Q  153 atatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaatt 227  Q
    ||||||||||||||||||||| ||  | || ||||||||| ||||||||||||  ||||||| |||| |||||||    
T  8600276 atatttgttttggttcggttcagtttgattcataggtaagtaaatggttaaccgtaccataactttgattcaatt 8600202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 40929465 - 40929383
Alignment:
Q  159 gttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||| |||||||||||| | ||||| ||| | |||||  ||||||| |||||||| ||||||||| ||||||||| ||||||    
T  40929465 gttttagttcggttcggttcagttaacaggcacgcaaacagttaaccgaaccataactttggttcagttcggttagttccaaa 40929383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 50303218 - 50303287
Alignment:
Q  172 tcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    ||||| ||||||||||| ||||||| |||||||| || ||||| ||||||||| ||||| ||||| ||||    
T  50303218 tcggttcggttaataggcaagcaaacggttaaccgaaacataactttggttcagttcggatagcttcaaa 50303287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 25639412 - 25639464
Alignment:
Q  181 ttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggtta 233  Q
    |||||| | |||||||||||||||| |||||||| ||||||||| ||||||||    
T  25639412 ttaataagcaagcaaatggttaaccgaaccataactttggttcagttcggtta 25639464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 20254758 - 20254825
Alignment:
Q  155 atttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggtt 222  Q
    |||||||||| ||||| |||||  | |||||||||| |||||||||||||| || ||||| |||||||    
T  20254758 atttgttttgattcggatcggtttgattaataggtatgcaaatggttaaccgaaacataactttggtt 20254825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 7364 - 7452
Alignment:
Q  151 aaatatttgttttggttcggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctcca 239  Q
    ||||||| |||||||||||||||||| ||||| ||||||||| ||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  7364 aaatattggttttggttcggttcggttcggttcataggtaagaaaacggttaaccgaaccataactttggttcagttcggttagctcca 7452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 54069 - 54141
Alignment:
Q  169 ggttcggtacggttaataggtaagcaaatggttaaccaaaccataattttggttcaattcggttagctccaaa 241  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| ||||||    
T  54069 ggttcggttcggttaataggtaagcaaacggttaaccgaaccataactttggttcagttcggttagttccaaa 54141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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