View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10619_low_21 (Length: 240)

Name: NF10619_low_21
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10619_low_21
NF10619_low_21
[»] chr1 (7 HSPs)
chr1 (88-235)||(36729936-36730083)
chr1 (113-229)||(20062561-20062677)
chr1 (135-235)||(26049854-26049953)
chr1 (113-235)||(20059530-20059652)
chr1 (185-235)||(30786117-30786167)
chr1 (185-235)||(46888713-46888763)
chr1 (186-235)||(46886692-46886741)
[»] chr5 (8 HSPs)
chr5 (88-235)||(20507434-20507581)
chr5 (88-235)||(21947453-21947601)
chr5 (114-235)||(10734685-10734806)
chr5 (145-235)||(17186236-17186326)
chr5 (121-229)||(27597206-27597311)
chr5 (114-159)||(7014178-7014223)
chr5 (185-224)||(31813732-31813771)
chr5 (187-229)||(41636881-41636923)
[»] chr4 (12 HSPs)
chr4 (88-235)||(55441618-55441765)
chr4 (108-229)||(11087003-11087124)
chr4 (185-235)||(39163386-39163436)
chr4 (185-235)||(46611385-46611435)
chr4 (185-225)||(53020219-53020259)
chr4 (185-235)||(54349043-54349093)
chr4 (185-235)||(4947084-4947134)
chr4 (120-161)||(24777714-24777755)
chr4 (108-161)||(35802285-35802338)
chr4 (108-161)||(54349102-54349155)
chr4 (108-159)||(4947145-4947194)
chr4 (185-217)||(24777673-24777705)
[»] chr3 (7 HSPs)
chr3 (108-235)||(39944301-39944428)
chr3 (117-218)||(49238208-49238309)
chr3 (108-222)||(25482908-25483022)
chr3 (110-226)||(51837740-51837856)
chr3 (88-127)||(49238081-49238120)
chr3 (108-161)||(16467385-16467438)
chr3 (185-225)||(49020757-49020797)
[»] chr2 (10 HSPs)
chr2 (120-235)||(36562088-36562203)
chr2 (90-218)||(37509772-37509898)
chr2 (185-235)||(10375387-10375437)
chr2 (185-235)||(19258760-19258810)
chr2 (185-235)||(24573771-24573821)
chr2 (185-235)||(27613719-27613769)
chr2 (108-161)||(22615896-22615949)
chr2 (185-235)||(10377649-10377699)
chr2 (108-161)||(10375325-10375378)
chr2 (108-161)||(10377587-10377640)
[»] chr8 (8 HSPs)
chr8 (108-229)||(33546148-33546272)
chr8 (108-164)||(31518780-31518836)
chr8 (173-235)||(33328683-33328745)
chr8 (108-161)||(33328090-33328143)
chr8 (108-161)||(24801899-24801952)
chr8 (185-224)||(12231691-12231730)
chr8 (108-161)||(12231629-12231682)
chr8 (185-229)||(24801961-24802005)
[»] chr6 (1 HSPs)
chr6 (90-229)||(241414-241554)
[»] chr7 (4 HSPs)
chr7 (185-235)||(4588856-4588906)
chr7 (185-235)||(219014-219064)
chr7 (108-161)||(218952-219005)
chr7 (108-161)||(4588794-4588847)
[»] scaffold0316 (2 HSPs)
scaffold0316 (185-223)||(10573-10611)
scaffold0316 (108-161)||(10620-10673)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 36729936 - 36730083
Alignment:
Q  88 gaatgctcatttgagtattgtctattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgt 187  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36729936 gaatgctcatttgagtattttctattatgttttcatgagacaacttattattaaaagatgttggatgcaattctaacataaaaatgaacaataactttgt 36730035  T
Q  188 tcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||    
T  36730036 tcttaaagaatgcatgaagtgatatcataaaccgcgagatttgaacga 36730083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 20062677 - 20062561
Alignment:
Q  113 tatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatat 212  Q
    |||||| | ||||||||| |  |||||||||||||| ||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||    
T  20062677 tatgttatgatgagacaatttgttattaaaagatgtcggatgcaattctaacatcaaaaagaacaataattttgttcttaaagaatgcatgaagtgatat 20062578  T
Q  213 cataaaccgcgagactt 229  Q
    |||||||||||||||||    
T  20062577 cataaaccgcgagactt 20062561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 26049854 - 26049953
Alignment:
Q  135 ttattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacg 234  Q
    |||||||||||||| ||||||||||||| | |||||| |||| |||  |||||||||||||||||||||||||| ||| ||||||||| |||||| ||||    
T  26049854 ttattaaaagatgtcggatgcaattcta-cataaaaaagaacgatagttttgttcttaaagaatgcatgaagtgctattataaaccgctagacttgaacg 26049952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 20059652 - 20059530
Alignment:
Q  113 tatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatat 212  Q
    |||||| |||||||| ||||  |||||| ||| ||| |||||||||| |||| | |||| |||||| || ||| ||||||||||||||| |||||||| |    
T  20059652 tatgttgtcatgagataacttgttattacaaggtgtcggatgcaattttaacatcaaaaagaacaacaattttattcttaaagaatgcaggaagtgatgt 20059553  T
Q  213 cataaaccgcgagactttaacga 235  Q
    |||||| ||| |||||| |||||    
T  20059552 cataaatcgcaagacttgaacga 20059530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 30786167 - 30786117
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  30786167 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 30786117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 46888763 - 46888713
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  46888763 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 46888713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 46886741 - 46886692
Alignment:
Q  186 gttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  46886741 gttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 46886692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 20507434 - 20507581
Alignment:
Q  88 gaatgctcatttgagtattgtctattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgt 187  Q
    ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  20507434 gaatgctcatttgagtattttctattatgttttcatgagaaaacttattattaaaagatgttggatgcaattctaacataaaaatgaacaataattttgt 20507533  T
Q  188 tcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  20507534 tcttaaagaatgcatgaagtgatatcataaaccgcgagacttgaacga 20507581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 21947453 - 21947601
Alignment:
Q  88 gaatgctcatttgagtattgt-ctattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttg 186  Q
    ||||| ||||||||||||| | |||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  21947453 gaatgttcatttgagtatttttctattatgttctcatgagaaaacttattattaaaagatgttggatgcaattctaacataaaaatgaacaataattttg 21947552  T
Q  187 ttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    ||||||||||||||||  ||||||||||||||||||||||||| |||||    
T  21947553 ttcttaaagaatgcatttagtgatatcataaaccgcgagacttgaacga 21947601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 10734806 - 10734685
Alignment:
Q  114 atgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatc 213  Q
    ||||| |||||||||||||  ||||||||| |||||||||||||||||||  | || | ||||||||| ||||||||||||||| |||||||||||||||    
T  10734806 atgttatcatgagacaacttgttattaaaatatgttggatgcaattctaatattaataagaacaataattttgttcttaaagaacgcatgaagtgatatc 10734707  T
Q  214 ataaaccgcgagactttaacga 235  Q
    ||||| || ||||||| |||||    
T  10734706 ataaatcgtgagacttgaacga 10734685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 17186326 - 17186236
Alignment:
Q  145 atgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||| ||||||||||||||| |||||| |||| |||| ||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||    
T  17186326 atgtcggatgcaattctaacataaaaaagaacgataattttgttcgtaaagaatgcatgaagtgatatcataaaccgtgaggcttgaacga 17186236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 27597206 - 27597311
Alignment:
Q  121 catgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaacc 220  Q
    ||||||||||||  |||||||||| ||||||||||||||||||| | ||    |||||||| |||||||||||||||   ||||| |||||||| ||| |    
T  27597206 catgagacaacttgttattaaaagttgttggatgcaattctaacattaa---taacaataattttgttcttaaagaaccaatgaaatgatatcaaaaatc 27597302  T
Q  221 gcgagactt 229  Q
    |||||||||    
T  27597303 gcgagactt 27597311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 7014223 - 7014178
Alignment:
Q  114 atgttttcatgagacaactcattattaaaagatgttggatgcaatt 159  Q
    ||||| |||||||||||||  |||||||||||||||||||||||||    
T  7014223 atgttgtcatgagacaacttgttattaaaagatgttggatgcaatt 7014178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 31813732 - 31813771
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcga 224  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  31813732 tgttcttaaagaattcatgaagtgatgtcataaaccgcga 31813771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 41636923 - 41636881
Alignment:
Q  187 ttcttaaagaatgcatgaagtgatatcataaaccgcgagactt 229  Q
    |||||||||||||||||||||| | ||||||||||||| ||||    
T  41636923 ttcttaaagaatgcatgaagtggtgtcataaaccgcgaaactt 41636881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 235
Target Start/End: Original strand, 55441618 - 55441765
Alignment:
Q  88 gaatgctcatttgagtattgtctattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgt 187  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  55441618 gaatgctcatttgagaattttctattatgttttcatgagaaaacttattattaaaagatgttggatgcaattctaacataaaaatgaacaataattttgt 55441717  T
Q  188 tcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  55441718 tcttaaagaatgcatgaagtgatatcataaaccgcgagacttgaacga 55441765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 11087124 - 11087003
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagt 207  Q
    ||||||||||| |||||||| ||||  |||||||||| |||||||| |||||||||| | || | |||||||||||||||||||||| || |||| ||||    
T  11087124 tctattatgttgtcatgagaaaacttgttattaaaagttgttggatccaattctaacattaataagaacaataactttgttcttaaaaaacgcataaagt 11087025  T
Q  208 gatatcataaaccgcgagactt 229  Q
    ||||||||||| ||| ||||||    
T  11087024 gatatcataaatcgcaagactt 11087003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 39163386 - 39163436
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  39163386 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 39163436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 46611435 - 46611385
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  46611435 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgagacttgaacga 46611385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 53020219 - 53020259
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgag 225  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  53020219 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgag 53020259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 54349093 - 54349043
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||| |||||    
T  54349093 tgttcttaaagaatgcaggaagtgatgtcataaaccgcgaggcttgaacga 54349043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 4947134 - 4947084
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    ||||||||||||| |||||||||||| |||||  ||||||||||| |||||    
T  4947134 tgttcttaaagaaagcatgaagtgatgtcataggccgcgagacttgaacga 4947084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 24777755 - 24777714
Alignment:
Q  120 tcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    |||||||||||||  ||||||||||| |||||||||||||||    
T  24777755 tcatgagacaacttgttattaaaagacgttggatgcaattct 24777714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 35802285 - 35802338
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  |||||| ||||||||||| ||||||||    
T  35802285 tctatcatgttgtcatgagacaacttgttattacaagatgttggaagcaattct 35802338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 54349155 - 54349102
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  |||||| ||||||||||| ||||||||    
T  54349155 tctatcatgttgtcatgagacaacttgttattacaagatgttggaagcaattct 54349102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 4947194 - 4947145
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaatt 159  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||    
T  4947194 tctatcatgttgtcatgagacaact--ttattaaaagacgttggatgcaatt 4947145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 24777705 - 24777673
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataa 217  Q
    |||||||||||||||||||||||||| ||||||    
T  24777705 tgttcttaaagaatgcatgaagtgatgtcataa 24777673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 39944428 - 39944301
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagt 207  Q
    ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||| | |||| ||||||||| |||||||||||| ||||||||||||    
T  39944428 tctattatgttgtcatgagacaacttgttattaaaagatgttggatgcaattctaacatcaaaaggaacaataattttgttcttaaataatgcatgaagt 39944329  T
Q  208 gatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||| |||||    
T  39944328 gatatcataaaccgcgagacttgaacga 39944301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 49238208 - 49238309
Alignment:
Q  117 ttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcata 216  Q
    ||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  49238208 ttttcatgagaaaacttactattaaaagatgttggatgcaattctaacgtaaaaatgaacaataattttattcttaaagaatgcatgaagtgatatcata 49238307  T
Q  217 aa 218  Q
    ||    
T  49238308 aa 49238309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 25483022 - 25482908
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagt 207  Q
    ||||| ||||| |||||||||||||  |||||||||||||||||||||||||||||| | || | ||||||||| |||||||||||||||  ||||||||    
T  25483022 tctatcatgttgtcatgagacaacttgttattaaaagatgttggatgcaattctaacattaataagaacaataattttgttcttaaagaacacatgaagt 25482923  T
Q  208 gatatcataaaccgc 222  Q
    |||||||||||||||    
T  25482922 gatatcataaaccgc 25482908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 226
Target Start/End: Complemental strand, 51837856 - 51837740
Alignment:
Q  110 tattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtga 209  Q
    ||||||||| |||||||||||||  |||||||||| |||||||  |||||||||| | |  | ||||||||| ||| |||||||| || | |||||||||    
T  51837856 tattatgttgtcatgagacaacttgttattaaaagttgttggacacaattctaacattagtaagaacaataattttattcttaaaaaacgtatgaagtga 51837757  T
Q  210 tatcataaaccgcgaga 226  Q
    ||||||||| |||||||    
T  51837756 tatcataaatcgcgaga 51837740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 49238081 - 49238120
Alignment:
Q  88 gaatgctcatttgagtattgtctattatgttttcatgaga 127  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  49238081 gaatgctcatttgagtattttctattatgttttcatgaga 49238120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 16467438 - 16467385
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  ||||||| |||||||||||||||||||    
T  16467438 tctatcatgttgtcatgagacaacttgttattaatagatgttggatgcaattct 16467385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 49020797 - 49020757
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgag 225  Q
    |||| ||||||||||||||||||||| ||||||||||||||    
T  49020797 tgtttttaaagaatgcatgaagtgatgtcataaaccgcgag 49020757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 120 - 235
Target Start/End: Original strand, 36562088 - 36562203
Alignment:
Q  120 tcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatgaagtgatatcataaac 219  Q
    ||||||||||| |  ||||||||||||||||||||||||||| ||   |||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  36562088 tcatgagacaatttgttattaaaagatgttggatgcaattctgacaataaaaagaacaataattttgttcttaaagaatgcatgaagtgatatcataaac 36562187  T
Q  220 cgcgagactttaacga 235  Q
    |||||| ||| |||||    
T  36562188 cgcgaggcttgaacga 36562203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 218
Target Start/End: Complemental strand, 37509898 - 37509772
Alignment:
Q  90 atgctcatttgagtattgt-ctattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgtt 188  Q
    ||||||| ||||||||| | |||||||||| |||||||||||||  |||||||||| ||||||||||||||  ||| | ||    |||||||| ||||||    
T  37509898 atgctcacttgagtatttttctattatgttgtcatgagacaacttgttattaaaagttgttggatgcaattacaacattaa---taacaataattttgtt 37509802  T
Q  189 cttaaagaatgcatgaagtgatatcataaa 218  Q
    ||||||||| |||| |||||||||||||||    
T  37509801 cttaaagaacgcataaagtgatatcataaa 37509772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 10375387 - 10375437
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  10375387 tgttcttaaagaatgtatgaagtgatgtcataaaccgcgagacttgaacga 10375437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 19258810 - 19258760
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    ||||||||||||||| |||||||||| |||||||||||||||||| |||||    
T  19258810 tgttcttaaagaatgaatgaagtgatgtcataaaccgcgagacttgaacga 19258760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 24573821 - 24573771
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||||||| ||||||||| |||| ||| |||||    
T  24573821 tgttcttaaagaatgcatgaagtgatgtcataaaccacgaggcttgaacga 24573771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 27613769 - 27613719
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||| |||||    
T  27613769 tgttcttaaagaatgcatgaagtgatgtcataaactgcgaggcttgaacga 27613719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 22615896 - 22615949
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  ||||||| |||||||||||||||||||    
T  22615896 tctatcatgttgtcatgagacaacttgttattaatagatgttggatgcaattct 22615949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 10377649 - 10377699
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||| |||| |||||||||| |||||||||||||| ||| |||||    
T  10377649 tgttcttaaaaaatgtatgaagtgatgtcataaaccgcgaggcttgaacga 10377699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 10375325 - 10375378
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  |||||| ||||||||||| ||||||||    
T  10375325 tctatcatgttgtcatgagacaacttgttattacaagatgttggaagcaattct 10375378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 10377587 - 10377640
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  |||||| ||||||||||| ||||||||    
T  10377587 tctatcatgttgtcatgagacaacttgttattacaagatgttggaagcaattct 10377640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 229
Target Start/End: Original strand, 33546148 - 33546272
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatg---ttggatgcaattctaacttaaaaatgaacaataactttgttcttaaagaatgcatga 204  Q
    ||||||||||| |||||||||||||  |||||||||||||   ||| ||||||||||||| | |||||||||||||| || |||||||||||||||||||    
T  33546148 tctattatgttgtcatgagacaacttgttattaaaagatgatgttgaatgcaattctaacatcaaaatgaacaataatttagttcttaaagaatgcatga 33546247  T
Q  205 agtgatatcataaaccgcgagactt 229  Q
    ||||||||||||||| | |||||||    
T  33546248 agtgatatcataaactgtgagactt 33546272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 31518780 - 31518836
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattctaac 164  Q
    ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  31518780 tctatcatgttgtcatgagacaacttattattaaaagatgttggatgcaattctaac 31518836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 33328683 - 33328745
Alignment:
Q  173 gaacaataactttgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||  ||||| ||| |||||    
T  33328683 gaacaataattttgttctcaaagaatgcatgaagtgatatcataaattgcgaggcttgaacga 33328745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 33328090 - 33328143
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||||||||| |||||||| ||||  |||||||||||||||||||||||||||    
T  33328090 tctattatgttgtcatgagaaaacttgttattaaaagatgttggatgcaattct 33328143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 24801899 - 24801952
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||| ||||||||  |||||||||||||||||||||||||||    
T  24801899 tctatcatgttgtcattagacaacttgttattaaaagatgttggatgcaattct 24801952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 12231691 - 12231730
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcga 224  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  12231691 tgttcttaaagaatgcatgaagtgatgtcttaaaccgcga 12231730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 12231629 - 12231682
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  |||||| ||||||||||| ||||||||    
T  12231629 tctatcatgttgtcatgagacaacttgttattacaagatgttggaagcaattct 12231682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 24801961 - 24802005
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactt 229  Q
    |||||||||||||| ||||||||||| |||||| ||| |||||||    
T  24801961 tgttcttaaagaatccatgaagtgatgtcataagccgtgagactt 24802005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 241414 - 241554
Alignment:
Q  90 atgctcatttgagtattgtct-attatgttttcatgagacaactcattattaaaagatgttggatgcaattctaacttaaaaatgaacaataactttgtt 188  Q
    ||||||| ||||||||| | | |||||||| |||||||||||||  ||||||||||||||||| |||||||||||| | || | ||||||||| ||||||    
T  241414 atgctcacttgagtatttttttattatgttgtcatgagacaacttgttattaaaagatgttgggtgcaattctaacattaataagaacaataattttgtt 241513  T
Q  189 cttaaagaatgcatgaagtgatatcataaaccgcgagactt 229  Q
    ||||||||||| || || |||| ||||||| ||||||||||    
T  241514 cttaaagaatgaataaaatgatctcataaatcgcgagactt 241554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 4588856 - 4588906
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  4588856 tgttcttaaagaatgcatgaagtgatgtcataaaccgcgaggcttgaacga 4588906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 219014 - 219064
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcgagactttaacga 235  Q
    |||| ||||||||||||||||||||| ||||||| |||||| ||| |||||    
T  219014 tgtttttaaagaatgcatgaagtgatgtcataaatcgcgaggcttgaacga 219064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 218952 - 219005
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  |||||| ||||||||||| ||||||||    
T  218952 tctatcatgttgtcatgagacaacttgttattacaagatgttggaagcaattct 219005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 4588794 - 4588847
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  |||||| ||||||||||| ||||||||    
T  4588794 tctatcatgttgtcatgagacaacttgttattacaagatgttggaagcaattct 4588847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 10611 - 10573
Alignment:
Q  185 tgttcttaaagaatgcatgaagtgatatcataaaccgcg 223  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10611 tgttcttaaagaatgcatgaagtgatgtcataaaccgcg 10573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 161
Target Start/End: Complemental strand, 10673 - 10620
Alignment:
Q  108 tctattatgttttcatgagacaactcattattaaaagatgttggatgcaattct 161  Q
    ||||| ||||| |||||||||||||  |||||| ||||||||||| ||||||||    
T  10673 tctatcatgttgtcatgagacaacttgttattacaagatgttggaagcaattct 10620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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