View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10619_low_25 (Length: 228)

Name: NF10619_low_25
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10619_low_25
NF10619_low_25
[»] chr5 (11 HSPs)
chr5 (18-212)||(13043044-13043238)
chr5 (18-212)||(13113040-13113234)
chr5 (81-209)||(13112299-13112427)
chr5 (94-209)||(13042305-13042420)
chr5 (123-209)||(13042590-13042676)
chr5 (97-199)||(36388971-36389073)
chr5 (123-209)||(13112588-13112674)
chr5 (85-168)||(13112794-13112877)
chr5 (142-193)||(9498694-9498745)
chr5 (141-193)||(624263-624315)
chr5 (141-193)||(26074679-26074731)
[»] chr4 (9 HSPs)
chr4 (94-215)||(11197271-11197392)
chr4 (81-215)||(11196977-11197115)
chr4 (94-213)||(10396178-10396297)
chr4 (140-213)||(10396463-10396536)
chr4 (117-215)||(34946126-34946224)
chr4 (106-215)||(922463-922572)
chr4 (146-208)||(51681590-51681652)
chr4 (81-160)||(34946377-34946456)
chr4 (141-193)||(54936263-54936315)
[»] chr7 (6 HSPs)
chr7 (96-212)||(21416135-21416251)
chr7 (81-213)||(21416410-21416542)
chr7 (81-213)||(23568981-23569113)
chr7 (155-215)||(27598030-27598090)
chr7 (83-195)||(36675649-36675761)
chr7 (83-134)||(27597819-27597870)
[»] chr8 (4 HSPs)
chr8 (95-212)||(18829835-18829952)
chr8 (81-215)||(3671120-3671254)
chr8 (81-215)||(3670778-3670912)
chr8 (182-215)||(5981813-5981846)
[»] chr2 (6 HSPs)
chr2 (81-168)||(22062773-22062860)
chr2 (116-215)||(28226382-28226481)
chr2 (106-209)||(13792500-13792601)
chr2 (112-212)||(28226703-28226802)
chr2 (142-193)||(42514716-42514767)
chr2 (142-192)||(40679669-40679719)
[»] chr6 (3 HSPs)
chr6 (83-212)||(11637993-11638123)
chr6 (110-208)||(11637729-11637827)
chr6 (146-210)||(22605299-22605363)
[»] chr3 (9 HSPs)
chr3 (106-215)||(48127819-48127928)
chr3 (119-213)||(53596007-53596101)
chr3 (119-213)||(53596322-53596416)
chr3 (87-213)||(16143485-16143608)
chr3 (110-196)||(53596539-53596625)
chr3 (81-144)||(43978552-43978615)
chr3 (142-193)||(22303699-22303750)
chr3 (148-210)||(54017594-54017656)
chr3 (186-215)||(40195904-40195933)
[»] chr1 (3 HSPs)
chr1 (106-208)||(31973339-31973441)
chr1 (141-193)||(17294644-17294696)
chr1 (141-193)||(34364992-34365044)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 13043238 - 13043044
Alignment:
Q  18 acaattattcttgaatagggttatatacaccgtaaatctttcgttaaagagttttaacgtttctgttggggagtccggggagcgctttgagcggcaatgg 117  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| |||| |||||||    
T  13043238 acaattattcttgaatagggttatataaatcgtaaatttttcgttaaagagttttaacgtttttgttgagaagtccggggagcgcttggagcagcaatgg 13043139  T
Q  118 gctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatccaa 212  Q
    ||||||  ||||||||||||||||||||| ||||||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13043138 gctaaatgtctaggacctgctaagagagagacaccaatctcttacccaaaatcctaagatgatgggtttatgggtctcctctcttatatatccaa 13043044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 13113234 - 13113040
Alignment:
Q  18 acaattattcttgaatagggttatatacaccgtaaatctttcgttaaagagttttaacgtttctgttggggagtccggggagcgctttgagcggcaatgg 117  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| |||| |||||||    
T  13113234 acaattattcttgaatagggttatataaatcgtaaatttttcgttaaagagttttaacgtttttgttgagaagtccggggagcgcttggagcagcaatgg 13113135  T
Q  118 gctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatccaa 212  Q
    ||||||  ||||||||||||||||||||| ||||||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  13113134 gctaaatgtctaggacctgctaagagagagacaccaatctcttacccaaaatcctaagatgatgggtttatgggtctcctctcttatatatccaa 13113040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 13112427 - 13112299
Alignment:
Q  81 tgttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgat 180  Q
    ||||||||||   ||||||||||| ||||| ||||||| ||||| ||||||||| ||||||||||| ||| || ||||||||| ||||  | ||| ||||    
T  13112427 tgttggggaggttggggagcgcttggagcgacaatgggttaaacgtctaggacccgctaagagagagacatcacactcttaccaaaaactctaagacgat 13112328  T
Q  181 gggtttatgggtctcctctcttatatatc 209  Q
    |||||| ||||||||||| ||||||||||    
T  13112327 gggtttttgggtctcctcacttatatatc 13112299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 209
Target Start/End: Complemental strand, 13042420 - 13042305
Alignment:
Q  94 ggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    ||||||||||| ||||| ||||||| ||||| ||||||||| ||||||||||| ||| || ||||||||| ||||  | ||| |||||||||| ||||||    
T  13042420 ggggagcgcttggagcgacaatgggttaaacgtctaggacccgctaagagagagacatcacactcttaccaaaaactctaagacgatgggtttttgggtc 13042321  T
Q  194 tcctctcttatatatc 209  Q
    ||||| ||||||||||    
T  13042320 tcctcacttatatatc 13042305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 13042676 - 13042590
Alignment:
Q  123 acatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatc 209  Q
    |||||||||||  ||||||||||| |||||| ||||||| |||||| |  ||||| |||||||||||||||||||||||||||||||    
T  13042676 acatctaggacacgctaagagagagacaccacactcttatccaaaaccttaaggcaatgggtttatgggtctcctctcttatatatc 13042590  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 36388971 - 36389073
Alignment:
Q  97 gagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcc 196  Q
    |||||||  ||||||||||| ||||||  |||| |||| |||||||||||||||||| ||||| |||||||| || |||||  || ||||||||||||||    
T  36388971 gagcgctcagagcggcaatgcgctaaatgtctaagaccagctaagagagaaacaccacactctgacccaaaaccctaaggcactgagtttatgggtctcc 36389070  T
Q  197 tct 199  Q
    |||    
T  36389071 tct 36389073  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 13112674 - 13112588
Alignment:
Q  123 acatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatc 209  Q
    |||||||||||  ||||||||| | |||||| ||||||| |||||| |  ||| | |||||||||||||||||||||||||||||||    
T  13112674 acatctaggacacgctaagagaaagacaccacactcttatccaaaaccttaagacaatgggtttatgggtctcctctcttatatatc 13112588  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 13112877 - 13112794
Alignment:
Q  85 ggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaa 168  Q
    |||||||| ||||||||||   |||| ||||||||||||  ||||||||| ||||||||||| |||||| | ||||||||||||    
T  13112877 ggggagtctggggagcgctggaagcgacaatgggctaaatgtctaggacccgctaagagagagacaccacattcttacccaaaa 13112794  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 9498694 - 9498745
Alignment:
Q  142 agagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    ||||| |||||| ||||||||||||||||  ||||| |||||||||||||||    
T  9498694 agagagacaccacactcttacccaaaatcttaaggcaatgggtttatgggtc 9498745  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 624315 - 624263
Alignment:
Q  141 gagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    |||||| |||||| |||||||||||||| |  ||||| |||||||||||||||    
T  624315 gagagagacaccacactcttacccaaaacctcaaggctatgggtttatgggtc 624263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 26074731 - 26074679
Alignment:
Q  141 gagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    |||||| |||||| |||||||||||||| |  ||||| |||||||||||||||    
T  26074731 gagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 26074679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 11197392 - 11197271
Alignment:
Q  94 ggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    |||||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||| || ||||| |||||||||||||||    
T  11197392 ggggagcgtttggagcggcaatgggctaaacacctaggaccagctaagagagagacaccacactcttacccaaaaccctaaggcaatgggtttatgggtc 11197293  T
Q  194 tcctctcttatatatccaacgt 215  Q
    ||||||||||||||||||||||    
T  11197292 tcctctcttatatatccaacgt 11197271  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 215
Target Start/End: Complemental strand, 11197115 - 11196977
Alignment:
Q  81 tgttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgat 180  Q
    |||| ||||||| |||||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||  ||||||||| ||||||| ||||| ||    
T  11197115 tgtttgggagtctggggagcgtttggagcggcaatgggctaaacacctaggaccagctaagagagagacacctcactcttacctaaaatcctaaggcaat 11197016  T
Q  181 gggtttatgggtctcctctct----tatatatccaacgt 215  Q
    ||||||| |||||||||||||    ||||||||||||||    
T  11197015 gggtttaagggtctcctctctcttatatatatccaacgt 11196977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 10396297 - 10396178
Alignment:
Q  94 ggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    ||||||||||  ||||||||| | ||||||| |||| |||| ||||||||||| ||||||  |||||||| |||| || ||||| |||||||||||||||    
T  10396297 ggggagcgctgggagcggcaacgagctaaacgtctatgacccgctaagagagagacaccaccctcttacctaaaaccctaaggcaatgggtttatgggtc 10396198  T
Q  194 tcctctcttatatatccaac 213  Q
    | ||||||||||||| ||||    
T  10396197 ttctctcttatatattcaac 10396178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 10396536 - 10396463
Alignment:
Q  140 agagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatccaac 213  Q
    ||||||| | |||| ||||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||    
T  10396536 agagagagagaccacactcttatccaaaaccctaaggcaatgggtttatgggtctcctctcttatatatccaac 10396463  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 215
Target Start/End: Original strand, 34946126 - 34946224
Alignment:
Q  117 ggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatg-ggtttatgggtctcctctcttatatatccaacgt 215  Q
    |||||||| |||||||||| |||||||||| |||||| ||||||||||||||||| ||||| ||| |||||| | |||||||| |||| |||| ||||||    
T  34946126 ggctaaacgtctaggaccttctaagagagagacaccacactcttacccaaaatcctaaggc-atgaggtttacgagtctcctcccttaaatattcaacgt 34946224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 215
Target Start/End: Complemental strand, 922572 - 922463
Alignment:
Q  106 gagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttata 205  Q
    |||||||||||   ||||| ||||||| | ||||| ||||| |||||| ||||||| |||||  || ||| | |||||||||||||||||||||||| ||    
T  922572 gagcggcaatgacttaaacgtctaggatccgctaaaagagagacaccacactcttatccaaacccctaagacaatgggtttatgggtctcctctcttcta 922473  T
Q  206 tatccaacgt 215  Q
    |||| |||||    
T  922472 tatctaacgt 922463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 51681652 - 51681590
Alignment:
Q  146 aaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatat 208  Q
    |||||||| ||||||||||||||||  ||||| |||||| |||| ||| ||||||||||||||    
T  51681652 aaacaccacactcttacccaaaatcttaaggcaatgggtatatgagtcccctctcttatatat 51681590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 34946377 - 34946456
Alignment:
Q  81 tgttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactctt 160  Q
    ||||||||||||   | ||||||| |||||||||| |||||||| |||||||||  |||||||||| |||| | ||||||    
T  34946377 tgttggggagtctacgaagcgcttggagcggcaataggctaaacgtctaggacccactaagagagagacactacactctt 34946456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 54936315 - 54936263
Alignment:
Q  141 gagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    |||||| |||||| |||||||||||||| |  ||||| |||||||||||||||    
T  54936315 gagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 54936263  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 21416135 - 21416251
Alignment:
Q  96 ggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctc 195  Q
    ||||| ||| |||||||||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||| || ||||| |||||||||||||||||    
T  21416135 ggagcacttggagcggcaatggactaaacatctaggacccgctaagagagagacaccacactcttacccaaaaccctaaggcaatgggtttatgggtctc 21416234  T
Q  196 ctctcttatatatccaa 212  Q
    |||||||||||||||||    
T  21416235 ctctcttatatatccaa 21416251  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 21416410 - 21416542
Alignment:
Q  81 tgttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgat 180  Q
    |||||||||||| ||| ||||||| ||||| ||||||| | ||||||||||||| ||||||||||| |||||| | |||||||||||| |||||| | |     
T  21416410 tgttggggagtctgggaagcgcttggagcgacaatgggttgaacatctaggacccgctaagagagagacaccacattcttacccaaaacccaaagacaac 21416509  T
Q  181 gggtttatgggtctcctctcttatatatccaac 213  Q
    | |||||||||||||| |||||||||| |||||    
T  21416510 gagtttatgggtctccgctcttatataaccaac 21416542  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 23568981 - 23569113
Alignment:
Q  81 tgttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgat 180  Q
    |||||||||||| |||||||  |   |||||||||| ||||||| |||||||||  ||||  |||| ||| || |||||||||||||| |  ||||| ||    
T  23568981 tgttggggagtctggggagcattggtagcggcaatgagctaaacgtctaggacccactaaatgagagacatcacactcttacccaaaaccttaaggcaat 23569080  T
Q  181 gggtttatgggtctcctctcttatatatccaac 213  Q
    ||||||||||| ||||||| |||||||||||||    
T  23569081 gggtttatgggcctcctcttttatatatccaac 23569113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 27598090 - 27598030
Alignment:
Q  155 actcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatccaacgt 215  Q
    |||||||| ||||| || ||| | |||||||||||||||||||||||||||||||||||||    
T  27598090 actcttacgcaaaaccctaagacaatgggtttatgggtctcctctcttatatatccaacgt 27598030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 195
Target Start/End: Complemental strand, 36675761 - 36675649
Alignment:
Q  83 ttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgg 182  Q
    |||||||||  |||||||||||  |||  |||||||  |||| ||||||||||| ||||||||| |||||| ||| ||| ||||||||| |||||  |||    
T  36675761 ttggggagtatggggagcgcttgaagcatcaatgggtgaaacgtctaggacctgttaagagagagacaccacactattatccaaaatcctaaggcagtgg 36675662  T
Q  183 gtttatgggtctc 195  Q
     ||||||||||||    
T  36675661 atttatgggtctc 36675649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 27597870 - 27597819
Alignment:
Q  83 ttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacc 134  Q
    |||||||||| ||||||||||| ||||| ||||||| |||| ||||||||||    
T  27597870 ttggggagtctggggagcgcttggagcgacaatgggttaaatatctaggacc 27597819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 18829835 - 18829952
Alignment:
Q  95 gggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtct 194  Q
    |||||||||| ||||||||||||||||||| ||||||||| ||||||||| | | |||| ||||||| ||||||||| ||||| |||||||||| ||| |    
T  18829835 gggagcgcttggagcggcaatgggctaaacgtctaggacccgctaagagaaagataccacactcttatccaaaatcctaaggcaatgggtttataggttt 18829934  T
Q  195 cctctcttatatatccaa 212  Q
     |||||||| ||||||||    
T  18829935 actctcttaaatatccaa 18829952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 3671120 - 3671254
Alignment:
Q  81 tgttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgat 180  Q
    |||||||||||| ||||| ||| | ||||||||||| || |||  |||| |||| ||||||||||| |||||||||| ||| |||||| || |||||  |    
T  3671120 tgttggggagtctggggaacgcctggagcggcaatgagcgaaatgtctaagacccgctaagagagagacaccaaactattatccaaaaccctaaggcagt 3671219  T
Q  181 gggtttatgggtctcctctcttatatatccaacgt 215  Q
     ||||||||| ||||||||||||||||||||||||    
T  3671220 aggtttatggttctcctctcttatatatccaacgt 3671254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 3670778 - 3670912
Alignment:
Q  81 tgttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgat 180  Q
    ||||||||||||  ||| |||||| |||||| || |||  |||| |||| |||| || |||||||| |||||| | | ||| |||||| || ||||   |    
T  3670778 tgttggggagtctagggggcgcttggagcggtaacgggtgaaacgtctaagacccgccaagagagagacaccacattattatccaaaaccctaaggtagt 3670877  T
Q  181 gggtttatgggtctcctctcttatatatccaacgt 215  Q
    || |||||||||||| |||||||||||||||||||    
T  3670878 ggatttatgggtctcatctcttatatatccaacgt 3670912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 5981813 - 5981846
Alignment:
Q  182 ggtttatgggtctcctctcttatatatccaacgt 215  Q
    |||||||||||| |||||||||||||||||||||    
T  5981813 ggtttatgggtcccctctcttatatatccaacgt 5981846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 22062773 - 22062860
Alignment:
Q  81 tgttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaa 168  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||| | |||||||||||||||| ||||||||||||||    
T  22062773 tgttggggagtccggggagcacttggagcggcaatgagctaaacatttaggacccgttaagagagaaacaccacactcttacccaaaa 22062860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 28226481 - 28226382
Alignment:
Q  116 gggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatccaacgt 215  Q
    ||||||||||| |||||||||| |||||||| |||||| ||||||||| |||| || ||| | ||| |||||||||||||||||||||||||||||||||    
T  28226481 gggctaaacatataggacctgcaaagagagagacaccacactcttacctaaaaccctaagacaatgtgtttatgggtctcctctcttatatatccaacgt 28226382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 13792500 - 13792601
Alignment:
Q  106 gagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttata 205  Q
    ||||||||| || |||||||||||||||| ||||| |||||  || || |||||||||||||| |  ||| | |||||| || |||||||||||||||||    
T  13792500 gagcggcaagggactaaacatctaggacccgctaaaagaga--catcacactcttacccaaaacctcaagtcaatgggtgtacgggtctcctctcttata 13792597  T
Q  206 tatc 209  Q
    ||||    
T  13792598 tatc 13792601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 28226802 - 28226703
Alignment:
Q  112 caatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatcca 211  Q
    ||||| ||||||| ||||||| | |  |||||||| |||||| ||||||||| |||| || ||| | ||||||||||| |||||||||||||||||||||    
T  28226802 caatgtgctaaacgtctaggatccgtaaagagagagacaccacactcttaccaaaaa-cctaagacaatgggtttatgagtctcctctcttatatatcca 28226704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 42514767 - 42514716
Alignment:
Q  142 agagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    ||||| || ||| ||||||||||||||||  |||||||||||||||||||||    
T  42514767 agagagacgccacactcttacccaaaatcttaaggcgatgggtttatgggtc 42514716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 40679669 - 40679719
Alignment:
Q  142 agagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggt 192  Q
    ||||| || ||| ||||||||||||||||  ||||||||||||||||||||    
T  40679669 agagagacgccacactcttacccaaaatcttaaggcgatgggtttatgggt 40679719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 11637993 - 11638123
Alignment:
Q  83 ttggggagtccggggagcgctttg-agcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatg 181  Q
    ||||||||||  |||||||||| | ||||| |||||| ||||| ||||||||| || |||||||| |||||| ||||||||||||||||| ||||| |||    
T  11637993 ttggggagtcttgggagcgcttgggagcggtaatgggttaaacgtctaggacccgcaaagagagagacaccatactcttacccaaaatcctaaggcaatg 11638092  T
Q  182 ggtttatgggtctcctctcttatatatccaa 212  Q
    ||| ||  | ||| |||||||||||||||||    
T  11638093 ggtatacagatcttctctcttatatatccaa 11638123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 11637729 - 11637827
Alignment:
Q  110 ggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatat 208  Q
    ||||||||||||||  | ||||| | ||||  ||||| |||||| ||||||| ||||||||  ||| | |||||||||||||| |||||||||||||||    
T  11637729 ggcaatgggctaaatgtttaggatccgctataagagagacaccacactcttatccaaaatcttaagacaatgggtttatgggtatcctctcttatatat 11637827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 22605299 - 22605363
Alignment:
Q  146 aaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatcc 210  Q
    |||||||| | |||||||||||| |  ||||| |||||||||||||| ||| |||||||||||||    
T  22605299 aaacaccacattcttacccaaaaccttaaggcaatgggtttatgggtttccactcttatatatcc 22605363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 48127819 - 48127928
Alignment:
Q  106 gagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttata 205  Q
    |||||||||||| |||||| |||||||||  |||||||| | |||||| ||||||| ||||||    || || |||||||||||||||||||||||||||    
T  48127819 gagcggcaatggactaaacgtctaggaccatctaagagaaagacaccacactcttatccaaaacattaaagcaatgggtttatgggtctcctctcttata 48127918  T
Q  206 tatccaacgt 215  Q
    |||| |||||    
T  48127919 tatcaaacgt 48127928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 53596101 - 53596007
Alignment:
Q  119 ctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatccaac 213  Q
    |||||||||||||| | | || |||||| |||||| |||||||||||||| |  ||||  | |||||||||||||||||||||||||||||||||    
T  53596101 ctaaacatctaggatccgttatgagagagacaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaac 53596007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 53596416 - 53596322
Alignment:
Q  119 ctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatccaac 213  Q
    |||||||||||||| | | || |||||| |||||| |||||||||||||| |  ||||  | |||||||||||||||||||||||||||||||||    
T  53596416 ctaaacatctaggatccgttatgagagagacaccacactcttacccaaaaccttaaggtaacgggtttatgggtctcctctcttatatatccaac 53596322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 16143608 - 16143485
Alignment:
Q  87 ggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggttt 186  Q
    |||||| ||||||||||| ||||||||||||  ||||||| ||||||| | ||||||   ||||| | ||||||||||||||    ||||| ||| | ||    
T  16143608 ggagtctggggagcgcttggagcggcaatggattaaacatttaggacccgttaagag---aacactacactcttacccaaaactttaaggcaatgagctt 16143512  T
Q  187 atgggtctcctctcttatatatccaac 213  Q
    ||||||||| |||||||||||||||||    
T  16143511 atgggtctcgtctcttatatatccaac 16143485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 53596625 - 53596539
Alignment:
Q  110 ggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcc 196  Q
    ||||||| ||||||| ||||||||| |||| |||||| |||||| ||||||||| ||||||  ||| | ||||||||||||||||||    
T  53596625 ggcaatgagctaaacgtctaggacccgctatgagagagacaccacactcttacctaaaatcttaagtcaatgggtttatgggtctcc 53596539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 43978552 - 43978615
Alignment:
Q  81 tgttggggagtccggggagcgctttgagcggcaatgggctaaacatctaggacctgctaagaga 144  Q
    ||||| |||||| ||||||||||| ||||||||||||| ||||| ||||||||| | |||||||    
T  43978552 tgttgtggagtctggggagcgcttggagcggcaatgggttaaacgtctaggacccgttaagaga 43978615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 22303699 - 22303750
Alignment:
Q  142 agagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    |||||||||||| |||||||||||||| |  ||||| |||||||||||||||    
T  22303699 agagaaacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 22303750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 54017594 - 54017656
Alignment:
Q  148 acaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttatatatcc 210  Q
    |||||| |||||||||||||| |  ||||| |||||||||||| |  ||||||||||||||||    
T  54017594 acaccacactcttacccaaaaccttaaggcaatgggtttatggattccctctcttatatatcc 54017656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 215
Target Start/End: Original strand, 40195904 - 40195933
Alignment:
Q  186 tatgggtctcctctcttatatatccaacgt 215  Q
    ||||||||||||||||||||||||||||||    
T  40195904 tatgggtctcctctcttatatatccaacgt 40195933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 31973339 - 31973441
Alignment:
Q  106 gagcggcaatgggctaaacatctaggacctgctaagagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtctcctctcttata 205  Q
    |||| ||| |||||||||| ||||| | | ||||||||||| ||| || ||||||||||||||||  |||||   |||| |||| || ||||||||||||    
T  31973339 gagcagcagtgggctaaacgtctagaatccgctaagagagagacatcacactcttacccaaaatcttaaggcatcgggtatatgtgtatcctctcttata 31973438  T
Q  206 tat 208  Q
    |||    
T  31973439 tat 31973441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 17294696 - 17294644
Alignment:
Q  141 gagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    |||||| |||||| |||||||||||||| |  ||||| |||||||||||||||    
T  17294696 gagagagacaccacactcttacccaaaaccttaaggcaatgggtttatgggtc 17294644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 34365044 - 34364992
Alignment:
Q  141 gagagaaacaccaaactcttacccaaaatccaaaggcgatgggtttatgggtc 193  Q
    |||||| |||||| |||||||||||||| |  ||||| |||||||||||||||    
T  34365044 gagagagacaccacactcttacccaaaaccttaaggctatgggtttatgggtc 34364992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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