View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10619_low_27 (Length: 224)
Name: NF10619_low_27
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10619_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 48170954 - 48170741
Alignment:
| Q |
1 |
aaattaccgcttcaacacacactcgtaaaattatgttcataacaagttcactcagtgacacactatctttcgattttgaagtatctattcggaataatac |
100 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48170954 |
aaattaccgcctaaacacacactcgtaaaattatgttcataacaagttcactcagtgacacactatctttcgattttgaagtatctattcggaataatac |
48170855 |
T |
|
| Q |
101 |
tgttattgaaagacccaaccctaattttataacttccttatccgatggtcttgttaaaattgtaagttcctgtagaggctttatatttttgcatcataat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48170854 |
tgttattgaaagacccaaccctaattttataactcccttatccgatggtcttgttaaaattgtaagttcctgtagaggctttatatttttgcatcataat |
48170755 |
T |
|
| Q |
201 |
tcaagtttctacct |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48170754 |
tcaagtttctacct |
48170741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 33134191 - 33133975
Alignment:
| Q |
1 |
aaattaccgcttcaacacacactcgtaaaattatgttcataacaagttcactcagtgacacactatctttcgattttgaagtatctattcggaataatac |
100 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||| |||||||||||| |||||||| |||||||| ||||||||||||||| |||||||||| |||||||| |
|
|
| T |
33134191 |
aaataaccgcctcaacacacactagtaaaattgtgttcataacaaattcactcaatgacacacgatctttcgattttgaggtatctattcataataatac |
33134092 |
T |
|
| Q |
101 |
tgttattgaaagacccaaccctaattttataacttccttatccgatggtcttgttaaaattgtaagttcctgtagaggctttatatttttgc---atcat |
197 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | |||||| ||||||||| || |||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
33134091 |
tgttattgaaagacccaaccctagttttataaatcccttatttgatggtcttattgaaattgtaagtttctatagaggctttatatttttgcatgatcat |
33133992 |
T |
|
| Q |
198 |
aattcaagtttctacct |
214 |
Q |
| |
|
|||||||| ||| |||| |
|
|
| T |
33133991 |
aattcaagcttccacct |
33133975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33133750 - 33133865
Alignment:
| Q |
1 |
aaattaccgcttcaacacacactcgtaaaattatgttcataacaagttcactcagtgacacactatctttcgattttgaagtatctattcggaataatac |
100 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
33133750 |
aaataaccgcctcaacacacactagtaaaattgtgttcataacaaattcactcaatgacacact--ctttcgattttgaagtatctattcacaataatac |
33133847 |
T |
|
| Q |
101 |
tgttattgaaagacccaa |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33133848 |
tgttattgaaagacccaa |
33133865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 47207750 - 47207791
Alignment:
| Q |
154 |
ttaaaattgtaagttcctgtagaggctttatatttttgcatc |
195 |
Q |
| |
|
||||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
47207750 |
ttaaagttataagttcatgtagaggctttatatttttgcatc |
47207791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University