View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10619_low_28 (Length: 217)

Name: NF10619_low_28
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10619_low_28
NF10619_low_28
[»] chr6 (2 HSPs)
chr6 (9-202)||(4323071-4323264)
chr6 (40-85)||(29236253-29236298)
[»] chr7 (1 HSPs)
chr7 (52-97)||(438686-438731)
[»] chr3 (4 HSPs)
chr3 (39-83)||(1116387-1116431)
chr3 (39-85)||(4216084-4216130)
chr3 (52-85)||(33990740-33990773)
chr3 (47-95)||(2401482-2401530)
[»] scaffold0001 (1 HSPs)
scaffold0001 (52-105)||(398644-398697)
[»] chr5 (2 HSPs)
chr5 (52-85)||(6760516-6760549)
chr5 (53-93)||(29587688-29587728)
[»] chr4 (4 HSPs)
chr4 (42-79)||(51114743-51114780)
chr4 (43-95)||(1678672-1678724)
chr4 (39-95)||(2717785-2717841)
chr4 (51-103)||(25260539-25260591)
[»] chr1 (1 HSPs)
chr1 (50-83)||(34369548-34369581)
[»] chr8 (1 HSPs)
chr8 (53-93)||(11556955-11556995)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 4323071 - 4323264
Alignment:
Q  9 gaagcagagacaatatcatcagacacattgcatgtagatactgataataatttgagaaaattgaagtgattaaatgttaccacatgtataggtgttgcat 108  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4323071 gaagcacaaacaatatcatcagacacattgcatgtagatactgataacaatttgagaaaattgaagtgattaaatgttaccacatgtataggtgttgcat 4323170  T
Q  109 ccgacacctacacgtgtcggataccacatgcatcggttatttagcattgttttggcattgcatcttataatgcttagcggcatgttgatatttt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4323171 ccgacacctacacgtgtcggataccacatgcatcggttatttagcattgttttggcattgcatcttataatgcttagcggcatgttgatatttt 4323264  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 29236253 - 29236298
Alignment:
Q  40 atgtagatactgataataatttgagaaaattgaagtgattaaatgt 85  Q
    ||||||| ||| |||||||||||||||||| ||||||||| |||||    
T  29236253 atgtagacactaataataatttgagaaaatagaagtgattgaatgt 29236298  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 438731 - 438686
Alignment:
Q  52 ataataatttgagaaaattgaagtgattaaatgttaccacatgtat 97  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||||    
T  438731 ataataatttaagaaaattgaagtaattaaatgtaaccacatgtat 438686  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 1116387 - 1116431
Alignment:
Q  39 catgtagatactgataataatttgagaaaattgaagtgattaaat 83  Q
    |||||||| | || |||||||||||||||||||||||||||||||    
T  1116387 catgtagacattggtaataatttgagaaaattgaagtgattaaat 1116431  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 4216130 - 4216084
Alignment:
Q  39 catgtagatactgataataatttgagaaaattgaagtgattaaatgt 85  Q
    |||||||||||  |||||||||  |||||||||||||||||||||||    
T  4216130 catgtagataccaataataattaaagaaaattgaagtgattaaatgt 4216084  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 33990740 - 33990773
Alignment:
Q  52 ataataatttgagaaaattgaagtgattaaatgt 85  Q
    ||||||||||||||||||||||||| ||||||||    
T  33990740 ataataatttgagaaaattgaagtgcttaaatgt 33990773  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 2401530 - 2401482
Alignment:
Q  47 tactgataataatttgagaaaattgaagtgattaaatgttaccacatgt 95  Q
    ||||| |||||||||||||||||  |||||||||||||| || ||||||    
T  2401530 tactgctaataatttgagaaaatcaaagtgattaaatgtaactacatgt 2401482  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 398644 - 398697
Alignment:
Q  52 ataataatttgagaaaattgaagtgattaaatgttaccacatgtataggtgttg 105  Q
    |||||||||| ||||||||||||| ||| ||||| ||||| ||||| |||||||    
T  398644 ataataatttaagaaaattgaagtaattgaatgtaaccacgtgtattggtgttg 398697  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 6760549 - 6760516
Alignment:
Q  52 ataataatttgagaaaattgaagtgattaaatgt 85  Q
    ||||||||||||||||||| ||||||||||||||    
T  6760549 ataataatttgagaaaatttaagtgattaaatgt 6760516  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 29587688 - 29587728
Alignment:
Q  53 taataatttgagaaaattgaagtgattaaatgttaccacat 93  Q
    ||||||||| ||||||| ||||||||||||||| |||||||    
T  29587688 taataatttaagaaaatggaagtgattaaatgtaaccacat 29587728  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 51114780 - 51114743
Alignment:
Q  42 gtagatactgataataatttgagaaaattgaagtgatt 79  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  51114780 gtagatattgataataatttgagaaagttgaagtgatt 51114743  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 1678672 - 1678724
Alignment:
Q  43 tagatactgataataatttgagaaaattgaagtgattaaatgttaccacatgt 95  Q
    ||||||| | |||||||||||||||||  |||||||||||||| || ||||||    
T  1678672 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaactacatgt 1678724  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 2717785 - 2717841
Alignment:
Q  39 catgtagatactgataataatttgagaaaattgaagtgattaaatgttaccacatgt 95  Q
    ||||||||||||| ||||||||||| |||||||||  |||| ||||| | |||||||    
T  2717785 catgtagatactggtaataatttgataaaattgaaacgattgaatgtaatcacatgt 2717841  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 25260539 - 25260591
Alignment:
Q  51 gataataatttgagaaaattgaagtgattaaatgttaccacatgtataggtgt 103  Q
    ||||||||||| ||||||| ||||| ||||||||| |||| |||| |||||||    
T  25260539 gataataatttaagaaaatggaagtaattaaatgtaaccaaatgtgtaggtgt 25260591  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 34369548 - 34369581
Alignment:
Q  50 tgataataatttgagaaaattgaagtgattaaat 83  Q
    |||||||||||||||||||||||| |||||||||    
T  34369548 tgataataatttgagaaaattgaattgattaaat 34369581  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 11556995 - 11556955
Alignment:
Q  53 taataatttgagaaaattgaagtgattaaatgttaccacat 93  Q
    |||||||||||||||||| |||||||| ||||| |||||||    
T  11556995 taataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

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