View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10619_low_4 (Length: 372)

Name: NF10619_low_4
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10619_low_4
NF10619_low_4
[»] chr2 (7 HSPs)
chr2 (217-362)||(25557790-25557936)
chr2 (1-127)||(25558449-25558575)
chr2 (130-219)||(25558086-25558173)
chr2 (217-292)||(4865481-4865555)
chr2 (239-317)||(37828446-37828523)
chr2 (260-317)||(4865682-4865739)
chr2 (217-288)||(34887855-34887924)
[»] chr7 (6 HSPs)
chr7 (217-317)||(1505543-1505643)
chr7 (229-317)||(23457411-23457499)
chr7 (229-317)||(23533269-23533357)
chr7 (217-317)||(23474929-23475029)
chr7 (251-317)||(23443335-23443401)
chr7 (260-316)||(2169266-2169322)
[»] chr5 (3 HSPs)
chr5 (217-317)||(17476169-17476268)
chr5 (239-317)||(38299728-38299804)
chr5 (239-287)||(7148312-7148360)
[»] chr1 (3 HSPs)
chr1 (229-319)||(27630998-27631088)
chr1 (261-319)||(51249165-51249223)
chr1 (229-317)||(42175252-42175340)
[»] chr3 (3 HSPs)
chr3 (217-318)||(30259605-30259706)
chr3 (260-314)||(30259865-30259919)
chr3 (231-287)||(52236576-52236632)
[»] chr6 (3 HSPs)
chr6 (220-316)||(34448430-34448526)
chr6 (217-317)||(1706803-1706903)
chr6 (262-319)||(5449483-5449541)
[»] chr4 (3 HSPs)
chr4 (217-292)||(53801506-53801581)
chr4 (217-317)||(12828554-12828655)
chr4 (256-317)||(52074897-52074958)
[»] chr8 (1 HSPs)
chr8 (260-317)||(13706217-13706274)


Alignment Details
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 217 - 362
Target Start/End: Complemental strand, 25557936 - 25557790
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacg-ttctttattgggagaagaacaattt 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || ||| |||| |||||| ||||||    
T  25557936 gttatacttcatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttgtatgggagtgagcgtttttttgttggaagaagagcaattt 25557837  T
Q  316 tcaatatgagtatatactactcgcattgccatatttgggtcacaggt 362  Q
    | |||||||||||||||||||||||||||||||||||||||||||||    
T  25557836 ttaatatgagtatatactactcgcattgccatatttgggtcacaggt 25557790  T

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Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 25558575 - 25558449
Alignment:
Q  1 tgaaaagaagaatacgacgctgcacctgtgttgtgaaatagggatttaagagttgtgttttgtttttaacaggttgtgtaatgggcttattgggcttagt 100  Q
    |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25558575 tgaaaagaagaatacggcgatgcacctgtgttgtgaaatagggatttaggagttgtgttttgtttttaacaggttgtgtaatgggcttattaggcttagt 25558476  T
Q  101 ttaaaacttttactatcagccttacat 127  Q
    ||||||||||||||| |||||||||||    
T  25558475 ttaaaacttttactaccagccttacat 25558449  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 25558173 - 25558086
Alignment:
Q  130 taattgctaaaatggatataattttgctcttttttcttaattaaaattacctatttgtgttttaggggatttaattacctatttgttgtt 219  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  25558173 taattgctaaaatggatctaattttgctcttttttcttaattaa--ttacctatttgtgttttaggggatttaattacctatttgttgtt 25558086  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 292
Target Start/End: Complemental strand, 4865555 - 4865481
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtt 292  Q
    ||||||||| | |||||| || |||||||||| ||||||||| |||||||||| ||||| |||| |||||||||||    
T  4865555 gttatacttcagcttaccaaacgtgagttaactcacgtgggg-gtattttggtaagtttgtatgagagtgaacgtt 4865481  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 37828523 - 37828446
Alignment:
Q  239 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttc 317  Q
    |||||||||| |||| | || |||||||||||||||| |||| |||||| |||| ||| ||||||||||| ||||||||    
T  37828523 gtgagttaactcacgcgagg-gtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 4865682 - 4865739
Alignment:
Q  260 gtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttc 317  Q
    |||||||||||||||| ||||||||||||| || ||| ||||||| ||| ||||||||    
T  4865682 gtattttggtcagtttgtatgggagtgaacattttttgttgggaggagagcaattttc 4865739  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 34887924 - 34887855
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaa 288  Q
    ||||||||| | |||| |||| |||| ||||| |||||||||  ||||||||| ||||| ||||||||||||    
T  34887924 gttatacttcagcttatcgaacgtgaattaactcacgtgggg--tattttggttagtttgtatgggagtgaa 34887855  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 1505643 - 1505543
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaatttt 316  Q
    ||||||||| | |||| ||||||||||||||| ||| ||| | ||||||||||| |||||||||||||| |||||| ||| ||||||||||| |||||||    
T  1505643 gttatacttcagcttatcgaatgtgagttaactcacatggagggtattttggtcggtttatatgggagtaaacgttttttgttgggagaagagcaatttt 1505544  T
Q  317 c 317  Q
    |    
T  1505543 c 1505543  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 23457411 - 23457499
Alignment:
Q  229 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttc 317  Q
    |||||| ||||||||||||| |||||||   |||||||||| ||||| ||||||||||| |||| ||| || |||||||||||||||||    
T  23457411 cttaccaaatgtgagttaactcacgtggaaggtattttggtaagtttttatgggagtgagcgttttttgtttggagaagaacaattttc 23457499  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 23533357 - 23533269
Alignment:
Q  229 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttc 317  Q
    |||||| || |||||||||| ||||||| | |||||||||| ||||| ||||||||||| | || ||| ||||||||||||||||||||    
T  23533357 cttaccaaacgtgagttaactcacgtggtgggtattttggtaagtttttatgggagtgagcattttttgttgggagaagaacaattttc 23533269  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 23475029 - 23474929
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaatttt 316  Q
    ||||||||| | |||||| || |||||||||| ||| ||| | |||||||||| | ||| |||||||| || |||| ||| |||||||||||||||||||    
T  23475029 gttatacttcaacttaccaaacgtgagttaactcacatggagggtattttggtaaatttttatgggagagagcgttttttgttgggagaagaacaatttt 23474930  T
Q  317 c 317  Q
    |    
T  23474929 c 23474929  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 23443401 - 23443335
Alignment:
Q  251 acgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttc 317  Q
    |||||| | |||||||| | ||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  23443401 acgtggagggtattttgataagtttttatgggagtgagcgttttttgttgggagaagaacaattttc 23443335  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 2169266 - 2169322
Alignment:
Q  260 gtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaatttt 316  Q
    |||||||| || |||| ||||||||||| |||| ||| ||||||||||| |||||||    
T  2169266 gtattttgatcggtttgtatgggagtgagcgttttttgttgggagaagagcaatttt 2169322  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 17476169 - 17476268
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaatttt 316  Q
    ||||||||||| ||||||||| | |||||||| ||||||| | |||||||||||||||| |||| ||| ||||||| ||| |||||||||||||||||||    
T  17476169 gttatactttagcttaccgaacgcgagttaactcacgtggag-gtattttggtcagtttgtatgagagcgaacgttttttgttgggagaagaacaatttt 17476267  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 38299804 - 38299728
Alignment:
Q  239 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttc 317  Q
    |||||||||| |||| ||| |||||||| |||||||| |||||||||||||| ||||| ||||||||||| ||||||||    
T  38299804 gtgagttaactcacgcggg-agtattttagtcagtttgtatgggagtgaacg-tcttttttgggagaagagcaattttc 38299728  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 7148360 - 7148312
Alignment:
Q  239 gtgagttaacacacgtggggagtattttggtcagtttatatgggagtga 287  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||||||    
T  7148360 gtgagttaactcacgtagggagtattttggtcagtttgtatgggagtga 7148312  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 229 - 319
Target Start/End: Complemental strand, 27631088 - 27630998
Alignment:
Q  229 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttcaa 319  Q
    ||||||||| |||||||||| ||||||||  || |||| |||||||||||||||||||| |||| ||| ||||||||||| | ||||||||    
T  27631088 cttaccgaacgtgagttaactcacgtgggatgtgttttagtcagtttatatgggagtgagcgttttttgttgggagaagagctattttcaa 27630998  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 319
Target Start/End: Complemental strand, 51249223 - 51249165
Alignment:
Q  261 tattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttcaa 319  Q
    |||||| ||||||||||||| ||||| ||||  ||| ||||||||||| ||||||||||    
T  51249223 tattttagtcagtttatatgagagtgcacgtcttttgttgggagaagagcaattttcaa 51249165  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 317
Target Start/End: Original strand, 42175252 - 42175340
Alignment:
Q  229 cttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttc 317  Q
    ||||||||  |||||||||| ||||||| |  ||||| | || |||| |||||||||||  ||| ||| ||||||||||| ||||||||    
T  42175252 cttaccgagcgtgagttaactcacgtggaggatatttcgatcggtttgtatgggagtgagtgttttttgttgggagaagagcaattttc 42175340  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 30259706 - 30259605
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaatttt 316  Q
    ||||||||| |||| |||||| |||||||||| ||||||  |||||||||||||||||| ||||  ||||| |||| ||| ||||| ||||  |||||||    
T  30259706 gttatacttcatctgaccgaacgtgagttaactcacgtgacgagtattttggtcagtttgtatgaaagtgatcgttttttgttgggtgaagcgcaatttt 30259607  T
Q  317 ca 318  Q
    ||    
T  30259606 ca 30259605  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 30259865 - 30259919
Alignment:
Q  260 gtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaatt 314  Q
    |||||||| ||||||| ||||||||||| |||| ||| ||||||||||| |||||    
T  30259865 gtattttgatcagtttgtatgggagtgagcgttttttgttgggagaagagcaatt 30259919  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 52236576 - 52236632
Alignment:
Q  231 taccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtga 287  Q
    |||||||||||||||||| ||  | | ||||||||||||||||| || |||||||||    
T  52236576 taccgaatgtgagttaactcaaattgagagtattttggtcagttcatgtgggagtga 52236632  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 316
Target Start/End: Original strand, 34448430 - 34448526
Alignment:
Q  220 atactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaatttt 316  Q
    |||||| | |||||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||  ||| ||| || |||||||| |||||||    
T  34448430 atacttcagcttaccaaacgtgagctaacacacgtggggggtattttggtcagtttgtatgggcgtgagtgttttttgtttggagaagagcaatttt 34448526  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 1706803 - 1706903
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaatttt 316  Q
    ||||||||| | |||||||||  ||||||||| ||||||| | ||| |||| |||||||||||| |||||||  || ||| ||||||||||| || ||||    
T  1706803 gttatacttcaacttaccgaacatgagttaactcacgtggagggtactttgatcagtttatatgagagtgaatcttttttgttgggagaagagcagtttt 1706902  T
Q  317 c 317  Q
    |    
T  1706903 c 1706903  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 319
Target Start/End: Complemental strand, 5449541 - 5449483
Alignment:
Q  262 attttggtcagtttatatgggagtgaacg-ttctttattgggagaagaacaattttcaa 319  Q
    |||||||||||||| |||||||||||||| || ||| || |||||||| ||||||||||    
T  5449541 attttggtcagtttgtatgggagtgaacgcttttttgtttggagaagagcaattttcaa 5449483  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 53801506 - 53801581
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgtt 292  Q
    ||||||||| | |||| |||| |||||||||| ||||||| |||||||||||||||||| | || |||||||||||    
T  53801506 gttatacttcagcttatcgaacgtgagttaactcacgtggagagtattttggtcagtttgtttgagagtgaacgtt 53801581  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 12828554 - 12828655
Alignment:
Q  217 gttatactttatcttaccgaatgtgagttaacacacgtggggagtattttggtcagtttatatgggagtgaacgttcttt-attgggagaagaacaattt 315  Q
    ||||||||| ||||||||||| |||||||||| |||||| |   ||||||||||||||| |||| |||||||| || |||  |||||||||||  |||||    
T  12828554 gttatacttcatcttaccgaacgtgagttaactcacgtgagagatattttggtcagtttgtatgagagtgaacattttttggttgggagaagagaaattt 12828653  T
Q  316 tc 317  Q
    ||    
T  12828654 tc 12828655  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 52074897 - 52074958
Alignment:
Q  256 gggagtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttc 317  Q
    ||||||||||||||| || ||||||| ||||| |||| |||| || ||||||| ||||||||    
T  52074897 gggagtattttggtcggtctatatggaagtgagcgttttttactgagagaagagcaattttc 52074958  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 13706217 - 13706274
Alignment:
Q  260 gtattttggtcagtttatatgggagtgaacgttctttattgggagaagaacaattttc 317  Q
    |||||||||| ||||| |||||||||||||||| |||| ||| |||||| ||||||||    
T  13706217 gtattttggttagtttgtatgggagtgaacgttttttaatggtagaagagcaattttc 13706274  T

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