View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10619_low_5 (Length: 362)
Name: NF10619_low_5
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10619_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 5399626 - 5399283
Alignment:
| Q |
19 |
aatgtacctgttcaacatcatctctatcaaaatcatcacgagactgactaccataaataccagcaccttcagcatcaacaccatttttaccaaacttgaa |
118 |
Q |
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| T |
5399626 |
aatgtacctgttcaacatcatctctatcaaaatcatcacgagactgactaccataaataccagcaccttcagcatcaacaccatttttaccaaacttgaa |
5399527 |
T |
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| Q |
119 |
ccagcatgtgaatcttgacccattagagggtccaaatttagaggtgaagcttgag------catccaacactcttaactctaataccaagaaaccgagaa |
212 |
Q |
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| T |
5399526 |
ccagcatgtgaatcttgacccattagagggtccaaatttagaggtgaagcttgagcttgaccatcgaacactcttaactctaataccaagaaaccgagaa |
5399427 |
T |
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| Q |
213 |
gaagacaagtttgtggaagaaacttgtgaagtgattaaagacttagaatttgaaatgatgggttggtgagttatgcatgtgattgaagacattgctgtgt |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5399426 |
gaagacaagtttgtggaagaaacttgcgaagtgattaaagacttagaatttgaaataatgggttggtgagttatgcatgtgattgaagacattg------ |
5399333 |
T |
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| Q |
313 |
ttgagtttgagtttgagttcaacaacaaaacttgtttcagttctgtgttc |
362 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5399332 |
ttgtgtttgagtttgagttcaacaacaaaacttgtttcagttctgtgttc |
5399283 |
T |
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