View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10619_low_6 (Length: 359)
Name: NF10619_low_6
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10619_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 6944966 - 6944633
Alignment:
| Q |
19 |
ggatcctatatgatattcttttcctctttagtttactcaatgtaatctatcatccatatatgtttctcacaaatcacaatagtaatcaaactcctaaaac |
118 |
Q |
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| T |
6944966 |
ggatcctatatgatattcttttcctctttagtttactcaatgtaatctatcatccatatatgtttctcacaagtcacaatagtaatcaaactcctaaaac |
6944867 |
T |
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| Q |
119 |
cacattttctagaatttgttttgtttttaatacagaaagacatcttttgttgcatttctacatgaaaacaactattaaataattgaaaaacagtaaggaa |
218 |
Q |
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| T |
6944866 |
cacattttctagaatttgttttgtttttaatacagaaagacatcttttgttgcatttctacatgaaaacaactattaaataattgaaaaacagtaaggaa |
6944767 |
T |
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| Q |
219 |
gaacaactattaaataatnnnnnnncagtaatctcagagaaatgtgatagatgttggtaaacatagttgatcaatgatcataacccttgcagatgttctt |
318 |
Q |
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| T |
6944766 |
gaacaactattaaataataaaaaaacagtaatctcagagaaatgtgatagatgttggtaaacatagttgatcaatgatcataactcttgcagatattctt |
6944667 |
T |
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| Q |
319 |
tcttagtaagtcaaatcagctaaaacctatgcta |
352 |
Q |
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| T |
6944666 |
tcttagtaagtcaaattagctaaaacctatgcta |
6944633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 214
Target Start/End: Original strand, 7474307 - 7474494
Alignment:
| Q |
22 |
tcctatatgatattcttttcctctttagtttactcaatgtaatctatcatccatatatgtttctcacaaatcacaatagtaatcaaactcctaaaaccac |
121 |
Q |
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| T |
7474307 |
tcctatatgatatctttttcctcttcaacttcctcaatctaaactctcattcatatatgtttctcaaaa-------tagtactcaaactcctaaaaccac |
7474399 |
T |
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| Q |
122 |
attttctagaatttgttttgtttttaatac--agaaagacatcttttgttgcatttctacatgaaaacaactattaaataattgaaaaacagtaa |
214 |
Q |
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| T |
7474400 |
tttatctagattttgttttgtttttaacacatataaaggcatcttttgttgtattgctacatgcaaacaactatcaaataatccaaagacagtaa |
7474494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 7474499 - 7474597
Alignment:
| Q |
254 |
agagaaatgtgatagat---gttggtaaacatagttgatcaatgatcataacccttgcagatgttctttcttagtaagtcaaatcagctaaaacctatgc |
350 |
Q |
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| T |
7474499 |
agagaaatgtgaaagatctggtaggtaaacataattgatcaatgatcacaactcttgcaaatgttctttcttaataagac-aattagctaaaacatatgc |
7474597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 7485219 - 7485267
Alignment:
| Q |
254 |
agagaaatgtgatagatgttggtaaacatagttgatcaatgatcataac |
302 |
Q |
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| T |
7485219 |
agagaaatttgatagatgttggtaaagataattgatcaattatcataac |
7485267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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