View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10619_low_9 (Length: 341)
Name: NF10619_low_9
Description: NF10619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10619_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 144 - 323
Target Start/End: Original strand, 294481 - 294660
Alignment:
| Q |
144 |
cttccgacgcacttcgctccgccactctcctcgccgcaatcaactccctcaccgccgccattttcctccattttcagtttgaagaatgagtttgtgtaat |
243 |
Q |
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| T |
294481 |
cttccgacgcacttcgctccgccactctcctcgccgcaatcaactccctcaccgccgccattttcctccattttcagtttgaagaatgagtttctgtaat |
294580 |
T |
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| Q |
244 |
tgttgaagcaaaagaaacaatgttcagtgttcgaaatcttcatagacattactccttcaaacccttttcatctctctttc |
323 |
Q |
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| T |
294581 |
tgttgaagcaaaagaaacaatgttcagtgttcgaaatcttcatagacattactccttcaaacccttttcatctctctttc |
294660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 294345 - 294462
Alignment:
| Q |
1 |
aatttgaccgaattaaaactttacggatgaaagacatttggcaaaaatttaaatggttgagattacagaaagcaaacacatcatttttgttactaacaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
294345 |
aatttgaccgaattaaaactttacggatgaaagacatgtggccaaaatttgaatggttgagattaaagaaagcaaacacatcatttttgttactaacaaa |
294444 |
T |
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| Q |
101 |
acacaacccctacgaacc |
118 |
Q |
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||| |||||||||||||| |
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| T |
294445 |
acataacccctacgaacc |
294462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 13336507 - 13336438
Alignment:
| Q |
254 |
aaagaaacaatgttcagtgttcgaaatcttcatagacattactccttcaaacccttttcatctctctttc |
323 |
Q |
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| T |
13336507 |
aaagaaacaatgtccagtgttgaaaatcttcatagacattactcctttaaactcttttcatatctctttc |
13336438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 36380588 - 36380656
Alignment:
| Q |
254 |
aaagaaacaatgttcagtgttcgaaatcttcatagacattactccttcaaacccttttcatctctctttc |
323 |
Q |
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| T |
36380588 |
aaagaaacaatgtccagtgttgcaaatcttcatagaca-tactccttcaaactcttttcatatctctttc |
36380656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 4463106 - 4463035
Alignment:
| Q |
254 |
aaagaaacaatgttcagtgttcgaaatcttcatagac--attactccttcaaacccttttcatctctctttc |
323 |
Q |
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||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |||||||| |||||||| |
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| T |
4463106 |
aaagaaacaatgtccagtgttgcaaatcttcatagacatattactccttcaaactcttttcatatctctttc |
4463035 |
T |
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