View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10620_high_11 (Length: 240)

Name: NF10620_high_11
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10620_high_11
NF10620_high_11
[»] chr3 (12 HSPs)
chr3 (18-240)||(5299499-5299721)
chr3 (24-229)||(5250948-5251153)
chr3 (24-226)||(5268838-5269040)
chr3 (25-151)||(6479025-6479151)
chr3 (31-152)||(8455513-8455634)
chr3 (26-152)||(6519206-6519332)
chr3 (31-152)||(6736849-6736970)
chr3 (31-152)||(6553487-6553608)
chr3 (31-152)||(8590588-8590709)
chr3 (24-229)||(4387988-4388187)
chr3 (22-154)||(5281508-5281640)
chr3 (87-152)||(6948128-6948193)
[»] scaffold0425 (1 HSPs)
scaffold0425 (31-152)||(6526-6647)
[»] chr4 (1 HSPs)
chr4 (25-121)||(41068372-41068468)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 5299721 - 5299499
Alignment:
Q  18 caagttacactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299721 caagttacactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatg 5299622  T
Q  118 ttgtgtatgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299621 ttgtgtatgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcga 5299522  T
Q  218 cttcttttcatcgtttactgatc 240  Q
    |||||||||||||| ||||||||    
T  5299521 cttcttttcatcgtgtactgatc 5299499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 5251153 - 5250948
Alignment:
Q  24 acactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgt 123  Q
    |||||||||||||||||||||||  | |||||||||||||  |||||||||||||||   ||||||||||||||||||| |||||||||||||  ||  |    
T  5251153 acactcaattctatcaaccatgtgttggaagaagcggagatgaagcaataccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcat 5251054  T
Q  124 atgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttctt 223  Q
    |||| |  || || || || ||||||||||||||  |  |||||   ||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  5251053 atgaggttgaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctgaatctcaaccttctactagcaaggtattcgacttctt 5250954  T
Q  224 ttcatc 229  Q
    ||||||    
T  5250953 ttcatc 5250948  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 226
Target Start/End: Complemental strand, 5269040 - 5268838
Alignment:
Q  24 acactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgt 123  Q
    |||||||||||||||||||||||  | |||||||| ||||  ||||| | |||||||   ||||||||||||||||||| |||||||||||||  ||  |    
T  5269040 acactcaattctatcaaccatgtgttggaagaagctgagatgaagcagttccaaagcatgtacgtgaagaagtggcttgatgatcttaaacattatgcat 5268941  T
Q  124 atgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttctt 223  Q
    |||| |  || || || || ||||||||||||||  | ||||||   ||||||| |||| |||| ||||||||||||||||||||||||||||||||| |    
T  5268940 atgaggttgaccagctgttagatgagattgcaactgatacaccattgaagaagcagaaacttgaatctcaaccttctactagcaaggtattcgacttcat 5268841  T
Q  224 ttc 226  Q
    |||    
T  5268840 ttc 5268838  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 6479025 - 6479151
Alignment:
Q  25 cactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgta 124  Q
    |||||||||||||||||||||| || |||||||| |||| |||||| ||||||| |  ||| |||||||||||||||| | | |||||||||||||| ||    
T  6479025 cactcaattctatcaaccatgtgctggaagaagcagagataaagcagtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgttta 6479124  T
Q  125 tgaagcagatcaacttttggatgagat 151  Q
    ||||||||| ||||| || ||||||||    
T  6479125 tgaagcagaccaactattagatgagat 6479151  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 8455634 - 8455513
Alignment:
Q  31 attctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagc 130  Q
    ||||||||||||| ||||| || ||||| |||| |||||| ||||||| |  ||| |||||||||||||||| |||||||||||||||||| ||||||||    
T  8455634 attctatcaaccaagtactagacgaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagc 8455535  T
Q  131 agatcaacttttggatgagatt 152  Q
    ||| ||||| || |||||||||    
T  8455534 agaccaactattagatgagatt 8455513  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 152
Target Start/End: Original strand, 6519206 - 6519332
Alignment:
Q  26 actcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtat 125  Q
    ||||||||||||||||||||| || |||||||| |||   ||||| ||||||| |  ||| |||||||||||||||| ||| |||||||||||||| |||    
T  6519206 actcaattctatcaaccatgtgcttgaagaagcagagctgaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttat 6519305  T
Q  126 gaagcagatcaacttttggatgagatt 152  Q
    |||||||| ||||| || |||||||||    
T  6519306 gaagcagaccaactattagatgagatt 6519332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 6736970 - 6736849
Alignment:
Q  31 attctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagc 130  Q
    ||||||||||||| ||||| || ||||| |||| |||||| ||||||| |  ||| |||||||||||||||| ||| |||||||||||| | ||||||||    
T  6736970 attctatcaaccaagtactagacgaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagc 6736871  T
Q  131 agatcaacttttggatgagatt 152  Q
    ||| ||||| ||||||||||||    
T  6736870 agaccaactattggatgagatt 6736849  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 6553487 - 6553608
Alignment:
Q  31 attctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagc 130  Q
    ||||||||||||| ||||| || ||||| |||| |||||| ||||||| |  ||| |||||||||||||||| ||| |||||||||||||| ||||| ||    
T  6553487 attctatcaaccaagtactagacgaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggc 6553586  T
Q  131 agatcaacttttggatgagatt 152  Q
    ||| ||||| || |||||||||    
T  6553587 agaccaactattagatgagatt 6553608  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 8590709 - 8590588
Alignment:
Q  31 attctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagc 130  Q
    ||||||||||| | ||||| || ||||| |||| |||||| |||| ||||  ||| |||||||||||||||| ||| |||||||||||||| ||||||||    
T  8590709 attctatcaacgaagtactggacgaagcagagataaagcagtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagc 8590610  T
Q  131 agatcaacttttggatgagatt 152  Q
    ||| ||||| || |||||||||    
T  8590609 agaccaactattagatgagatt 8590588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 4387988 - 4388187
Alignment:
Q  24 acactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgt 123  Q
    ||||||||||||||||||| |||  | |||||||||||||  ||||| |||||||||   | ||||||||||||||||| |||||||||||||  ||  |    
T  4387988 acactcaattctatcaaccgtgtgttggaagaagcggagatgaagcagtaccaaagcatgtccgtgaagaagtggcttgatgatcttaaacataatgcat 4388087  T
Q  124 atgaagcagatcaacttttggatgagattgcaacctacacaccaaacaagaagctgaaagttgattctcaaccttctactagcaaggtattcgacttctt 223  Q
    |||| |  || || || || ||||||||||||||  |  |||||   ||||||| |||| |||      ||||||||||||||||||||||| |||||||    
T  4388088 atgaggttgaccagctgttagatgagattgcaactgatgcaccattgaagaagcagaaatttg------aaccttctactagcaaggtattcaacttctt 4388181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 5281640 - 5281508
Alignment:
Q  22 ttacactcaattctatcaaccatgtactcgaagaagcggagacaaa-gcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttg 120  Q
    ||||||| |||||||| || || || || |||||||| || ||||| ||| ||| ||||| |||| || ||||||||||||| |||||||||||||| ||    
T  5281640 ttacacttaattctataaatcaagtgctggaagaagcaga-acaaatgcagtacaaaagcacatatgtaaagaagtggcttgatgatcttaaacatgctg 5281542  T
Q  121 tgtatgaagcagatcaacttttggatgagattgc 154  Q
    | ||||| ||||| ||| |||| |||||||||||    
T  5281541 tatatgaggcagaccaaattttcgatgagattgc 5281508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 6948193 - 6948128
Alignment:
Q  87 gtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt 152  Q
    |||||||||||||||| ||| |||||||||||||| ||||| ||||| ||||| || |||||||||    
T  6948193 gtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatt 6948128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 6526 - 6647
Alignment:
Q  31 attctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagc 130  Q
    ||||||||||||| ||||| || ||||| |||| |||||| ||||||| |  ||| |||||||||||||||| ||| |||||||||||||| ||||| ||    
T  6526 attctatcaaccaagtactagacgaagcagagataaagcagtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggc 6625  T
Q  131 agatcaacttttggatgagatt 152  Q
    ||| ||||| || |||||||||    
T  6626 agaccaactattagatgagatt 6647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 41068372 - 41068468
Alignment:
Q  25 cactcaattctatcaaccatgtactcgaagaagcggagacaaagcaataccaaagctcatacgtgaagaagtggcttggtgatcttaaacatgttgt 121  Q
    ||||||||||||||||||||||  | |||||||| |||  | | || |||||||||  ||| |||||||| ||||||| ||| ||||||||||||||    
T  41068372 cactcaattctatcaaccatgtgttggaagaagcagagctataacagtaccaaagcatatatgtgaagaattggcttgatgaacttaaacatgttgt 41068468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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