View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10620_high_14 (Length: 217)
Name: NF10620_high_14
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10620_high_14 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 4490896 - 4490681
Alignment:
| Q |
2 |
tgcagcggttcaagtcaaatctaacattaacgcttccttttcttctcataaaatcaaggttgtatttggaatttgtattagagataaatatggcgcattt |
101 |
Q |
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| T |
4490896 |
tgcagcggttcaagtcaaatctaacattaacgcttccttttcttctcataaaatcaaggttgtatttggaatttgtattagagataaatatggcgcattt |
4490797 |
T |
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| Q |
102 |
attcttgctaaaacagaatattcacaccaatttgtccaattcatattggcgaagctcttggttttctttcagcgctcaagtggatttatgagctaaattt |
201 |
Q |
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| T |
4490796 |
attcttgctaaaacagaatattcacaccaatttgtccaattcatattggcgaagctcttggttttctttcggcgctcaagtggatttatgagctaaattt |
4490697 |
T |
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| Q |
202 |
ggaacctgtggattta |
217 |
Q |
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| T |
4490696 |
ggaacctgtggattta |
4490681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 4484247 - 4484437
Alignment:
| Q |
23 |
taacattaacgcttccttttcttctcataaaatcaaggttgtatttggaatttgtattagagataaatatggcgcatttattcttgctaaaacagaata- |
121 |
Q |
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| T |
4484247 |
taacattgatgcttccttttcgtctcataacaactag-ttgaatttggaatttatattagagataaatatgtcgattttattcttcctaaaacagaatgg |
4484345 |
T |
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| Q |
122 |
ttcacaccaatttgtccaattcatattggcgaagctcttggttttctttcagcgctcaagtggatttatgagctaaatttggaacctgtgga |
213 |
Q |
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| T |
4484346 |
ttcacaccaatttgtgcagttcacattggcaaagctcttggttttgtttcagtgctcaagtggattaatgagctaaatttggaaccggtgga |
4484437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 4504898 - 4504697
Alignment:
| Q |
18 |
aaatctaacattaacgcttccttttcttctcataaaatcaaggttgtatttggaatttgtattagagataaatatggcgcatttattcttgctaaaacag |
117 |
Q |
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|||| ||||||| |||||||||||||| ||||||| | ||| ||||||||| |||||||| |||||||||||||||||| || ||| || ||||||||| |
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| T |
4504898 |
aaatgtaacattgacgcttccttttctgctcataacaacaaagttgtatttcaaatttgtagtagagataaatatggcgctttaattttttctaaaacag |
4504799 |
T |
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| Q |
118 |
aat-attcacaccaatttgtccaattcatattggcgaagctcttggttttctttcagcgctc-aagtggatttatgagctaaatttggaacctgtggatt |
215 |
Q |
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||| || |||||||||||| |||||| ||||| |||||||||||||||||||| |||| | ||||||| || ||| |||||||||||||| |||||| |
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| T |
4504798 |
aatggttgacaccaatttgtgcaattcgcattggtgaagctcttggttttctttcggcgcacaaagtggacttgtgaactaaatttggaaccgatggatt |
4504699 |
T |
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| Q |
216 |
ta |
217 |
Q |
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|| |
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| T |
4504698 |
ta |
4504697 |
T |
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