View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10620_high_15 (Length: 216)
Name: NF10620_high_15
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10620_high_15 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 46551735 - 46551950
Alignment:
| Q |
1 |
atacttttgtttgatggaagtgcttgtataatcttttctaataagaaatcccctaattttcaggttagtcctagaggaatggatgattgcaatggacatg |
100 |
Q |
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| T |
46551735 |
atacttttgtttgatggaagtgcttgtataatcttttctaataagaaatcccctaattttcaggttagtcctagaggaatggatgattgcaatggacatg |
46551834 |
T |
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| Q |
101 |
gctctagaatacccgtaaaattaaaaacttatgtggaactgactatggatgtagcttctgcttcacctcggcggtatttctttgaggcaagatgctgtat |
200 |
Q |
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| T |
46551835 |
gctctagaatacccgtaaaattaaaaacttatgtggaactgactatggatgtagcttctgcttcacctcggcggtatttctttgaggcaagatgctgtat |
46551934 |
T |
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| Q |
201 |
gtttgtttgactttcc |
216 |
Q |
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| T |
46551935 |
gtttgtttgactttcc |
46551950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 1028275 - 1028490
Alignment:
| Q |
1 |
atacttttgtttgatggaagtgcttgtataatcttttctaataagaaatcccctaattttcaggttagtcctagaggaatggatgattgcaatggacatg |
100 |
Q |
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||||||||||||||| ||||||| |||||||| |||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
1028275 |
atacttttgtttgattgaagtgcctgtataatattttcttataagaaatcccctgattttcagattagtcctagaggaacggatgattgcaatggacatg |
1028374 |
T |
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| Q |
101 |
gctctagaatacccgtaaaattaaaaacttatgtggaactgactatggatgtagcttctgcttcacctcggcggtatttctttgaggcaagatgctgtat |
200 |
Q |
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| T |
1028375 |
gctctagaatacccatacaattaaaaacttttgtggaactgactatggatgtagcttctgcttcacctcggcggtatttctttgaggcaagatgctgtat |
1028474 |
T |
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| Q |
201 |
gtttgtttgactttcc |
216 |
Q |
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| T |
1028475 |
gtttgtttgactttcc |
1028490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 43 - 204
Target Start/End: Original strand, 40830949 - 40831107
Alignment:
| Q |
43 |
aagaaatcccctaattttcaggttagtcctagaggaatggatgattgcaatggacatggctctagaatacccgtaaaattaaaaacttatgtggaactga |
142 |
Q |
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| T |
40830949 |
aagaaatcccctatatttcaggttagtcctaaaggaatggat---tgcaatggacatggctctagaatgcctgtaaaattaagaacttttgtggaattga |
40831045 |
T |
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| Q |
143 |
ctatggatgtagcttctgcttcacctcggcggtatttctttgaggcaagatgctgtatgttt |
204 |
Q |
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| T |
40831046 |
ctatggatgtagcttcagcttcccctcggcggtatttcttcgaggcaagatgctgtatgttt |
40831107 |
T |
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