View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10620_high_4 (Length: 374)
Name: NF10620_high_4
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10620_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 37280410 - 37280614
Alignment:
| Q |
17 |
actaaccataagcatttctagcnnnnnnnctaactataaccatatattgttgatgtatacttccataaatagttgaaatgtgaggtgtaagagtgtttga |
116 |
Q |
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| T |
37280410 |
actaaccataagcatttctagcaaaaaaactaactataaccatatattgttgatgtatacttccataaatagttaaaatgtgaggtgtaagagtgtttga |
37280509 |
T |
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| Q |
117 |
taccaatgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaatactccaacccaccaacattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37280510 |
taccaatgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaatactccaacccaccaacattc |
37280609 |
T |
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| Q |
217 |
cttta |
221 |
Q |
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||||| |
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| T |
37280610 |
cttta |
37280614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 37280695 - 37280765
Alignment:
| Q |
296 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgct |
366 |
Q |
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| T |
37280695 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgct |
37280765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 37276671 - 37276794
Alignment:
| Q |
98 |
gaggtgtaagagtgtttgataccaatgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaata |
197 |
Q |
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| T |
37276671 |
gaggtgtaagaatgtttgataccaacgactttcctcacacttcggaatccctttgaactattataattttatgtatattatcaatcatttcctacgacta |
37276770 |
T |
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| Q |
198 |
ctccaacccaccaacattccttta |
221 |
Q |
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| T |
37276771 |
ctccaatccaccaacatttcttta |
37276794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 37276846 - 37276916
Alignment:
| Q |
296 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgct |
366 |
Q |
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| T |
37276846 |
tcatggcacattcaaggcatgttgttattctagcccttgtaatgttagccatgattggccttgcctatgct |
37276916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 37264896 - 37264966
Alignment:
| Q |
296 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgct |
366 |
Q |
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| T |
37264896 |
tcatggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtctcgcctatgct |
37264966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 37261133 - 37261193
Alignment:
| Q |
306 |
ttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgct |
366 |
Q |
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||||||| |||| |||||||| |||||||||||||||||||||||||| ||| |||||||| |
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| T |
37261133 |
ttcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgct |
37261193 |
T |
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