View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10620_low_1 (Length: 557)

Name: NF10620_low_1
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10620_low_1
NF10620_low_1
[»] chr4 (15 HSPs)
chr4 (20-436)||(22054918-22055347)
chr4 (24-92)||(17729420-17729487)
chr4 (20-92)||(23225859-23225930)
chr4 (23-94)||(43722757-43722827)
chr4 (22-92)||(4916149-4916218)
chr4 (39-93)||(8494980-8495034)
chr4 (46-87)||(5179909-5179950)
chr4 (36-93)||(5360291-5360348)
chr4 (36-93)||(33900735-33900792)
chr4 (42-91)||(39842029-39842078)
chr4 (25-93)||(7230273-7230340)
chr4 (61-93)||(14137043-14137075)
chr4 (25-81)||(14197432-14197487)
chr4 (66-94)||(15170140-15170168)
chr4 (24-92)||(43034342-43034409)
[»] chr3 (13 HSPs)
chr3 (34-93)||(17588355-17588414)
chr3 (24-89)||(2186427-2186491)
chr3 (24-92)||(7464491-7464558)
chr3 (42-93)||(53633634-53633685)
chr3 (20-94)||(8127455-8127528)
chr3 (39-89)||(41442940-41442990)
chr3 (53-87)||(54897319-54897353)
chr3 (46-91)||(11436502-11436547)
chr3 (24-93)||(21160045-21160113)
chr3 (61-94)||(51250269-51250302)
chr3 (22-93)||(4216398-4216467)
chr3 (19-87)||(10922303-10922370)
chr3 (46-94)||(16980375-16980423)
[»] chr8 (5 HSPs)
chr8 (24-93)||(33373752-33373820)
chr8 (20-92)||(44293569-44293640)
chr8 (34-88)||(15188897-15188951)
chr8 (24-93)||(39821877-39821945)
chr8 (61-93)||(44222641-44222673)
[»] chr5 (10 HSPs)
chr5 (23-92)||(36321492-36321561)
chr5 (34-93)||(3389155-3389214)
chr5 (40-93)||(689540-689593)
chr5 (24-93)||(5614758-5614826)
chr5 (24-93)||(6489000-6489068)
chr5 (24-89)||(11318195-11318260)
chr5 (46-87)||(11647196-11647237)
chr5 (61-94)||(40837939-40837972)
chr5 (42-94)||(23118068-23118120)
chr5 (46-94)||(26376958-26377006)
[»] chr2 (8 HSPs)
chr2 (24-92)||(24592846-24592913)
chr2 (34-92)||(2256965-2257023)
chr2 (24-94)||(5676731-5676800)
chr2 (39-84)||(22359007-22359052)
chr2 (46-94)||(17560248-17560296)
chr2 (38-86)||(18324907-18324955)
chr2 (34-94)||(25562006-25562066)
chr2 (37-93)||(45032686-45032742)
[»] chr1 (9 HSPs)
chr1 (42-94)||(30678830-30678882)
chr1 (35-95)||(52267755-52267815)
chr1 (26-89)||(3509942-3510005)
chr1 (46-93)||(31061924-31061971)
chr1 (43-93)||(18521240-18521290)
chr1 (34-92)||(30798756-30798814)
chr1 (19-92)||(37944125-37944197)
chr1 (24-92)||(8269368-8269435)
chr1 (46-90)||(49875620-49875664)
[»] chr6 (9 HSPs)
chr6 (42-93)||(9987074-9987125)
chr6 (46-93)||(20208112-20208159)
chr6 (46-93)||(22102135-22102182)
chr6 (42-87)||(10497169-10497214)
chr6 (46-94)||(3358383-3358431)
chr6 (36-92)||(7083003-7083059)
chr6 (25-93)||(8138459-8138526)
chr6 (43-91)||(24438300-24438348)
chr6 (46-94)||(28898848-28898896)
[»] chr7 (13 HSPs)
chr7 (34-92)||(7872757-7872815)
chr7 (20-94)||(34448606-34448679)
chr7 (62-92)||(35571970-35572000)
chr7 (20-93)||(46220947-46221018)
chr7 (34-94)||(5041331-5041391)
chr7 (24-92)||(5526719-5526786)
chr7 (42-94)||(7388056-7388108)
chr7 (39-87)||(18223737-18223785)
chr7 (42-94)||(36755007-36755058)
chr7 (42-94)||(36760804-36760855)
chr7 (24-92)||(40187636-40187703)
chr7 (44-92)||(40518914-40518962)
chr7 (34-86)||(43346573-43346625)
[»] scaffold0262 (1 HSPs)
scaffold0262 (24-92)||(15930-15997)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 22055347 - 22054918
Alignment:
Q  20 gtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacatccaataacaaatttaaaattgtatc 119  Q
    |||||| ||||||||||| |||||| ||||||||||||||| || ||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  22055347 gtcaggatttgaacccccggatcttgcatatagtatgcaagatctttatcaactgagttaagctcacgaggacatgcaataacaaatttaaaattgtatc 22055248  T
Q  120 acatgagcctttttattttgaccaatttaaattatgatctattgagaaaattcagttttatatcatatatctcaaggttaacgatatagcaagccattca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22055247 acatgagcctttttattttgaccaatttaaattatgatctattgagaaaattcagttttatatcatatatctcaaggttaactatatagcaagccattca 22055148  T
Q  220 ttattcattgtaatacgatttaaacaccatact-------------tggttttgagtgtaggttatcgtgtattgcatcttggacgtcgttttcatcatt 306  Q
    |||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22055147 ttattcattgtaatacgatttaaacaccatactttaatcttaagactggttttgagtgtaggttatcgtgtattgcatcttggacgtcattttcatcatt 22055048  T
Q  307 ttgatttttgttaatgaccagtgtggtgttcagatcatattttgagttaaatatgcaattaatttgattactgtatccttagaaggctaattcaattacc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22055047 ttgatttttgttaatgaccagtgtggtgttcagatcatattttgagttaaatatgcaattaatttgattactgtatccttagaaggctaattcaattacc 22054948  T
Q  407 tacaactagtatgttcaacccgaagtctaa 436  Q
    ||||||||||||||||| ||||||||||||    
T  22054947 tacaactagtatgttcagcccgaagtctaa 22054918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 17729487 - 17729420
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||||||| ||| ||| |||||| |||||||||| | ||||||||||| |||||||||||||||    
T  17729487 gggtttgaacccc-agaccttgcatatattatgcaaggttcataccaactgagctaagttcacgaggac 17729420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 23225930 - 23225859
Alignment:
Q  20 gtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||||||||||| | ||||| |||||| |||| |  || | |||||||||||||||||||||||||||    
T  23225930 gtcagggtttgaaccccga-atcttgcatatattatgaattgttcctaccaactgagttaagttcacgaggac 23225859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 43722827 - 43722757
Alignment:
Q  23 agggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    ||||||||||||||  || |||||||||| ||||||  |||| |||||||||||||||  ||||||||||||    
T  43722827 agggtttgaaccccg-gaccttacatatattatgcattgtccataccaactgagttaaactcacgaggacat 43722757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 4916218 - 4916149
Alignment:
Q  22 cagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||||||||| | |||||||||||| ||||||  || |  |||||||||| |||||||||||||||    
T  4916218 cagggtttgaaccccaa-atcttacatatattatgcattgttcaaaccaactgagctaagttcacgaggac 4916149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 8495034 - 8494980
Alignment:
Q  39 gatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||| |||||| ||||||  |||| ||||||||||| ||||||||||||||||    
T  8495034 gatcttgcatatattatgcattgtccctaccaactgagctaagttcacgaggaca 8494980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 5179909 - 5179950
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacg 87  Q
    |||||| |||||||  ||||||||||||||||||||||||||    
T  5179909 catataatatgcaatatccttaccaactgagttaagttcacg 5179950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 5360291 - 5360348
Alignment:
Q  36 ccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||| ||| |||| | |||||| | |||||||||||||||||||||||||| |||||    
T  5360291 ccagaccttgcatacattatgcatgatccttaccaactgagttaagttcacggggaca 5360348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 33900735 - 33900792
Alignment:
Q  36 ccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||||||| |||||| ||||||  |||||||||||||||| |||||| ||| |||||    
T  33900735 ccagatcttgcatatattatgcattgtccttaccaactgagataagtttacggggaca 33900792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 39842029 - 39842078
Alignment:
Q  42 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgagga 91  Q
    |||||||||| ||||||  ||||||| ||||||||||||| |||||||||    
T  39842029 cttacatatattatgcattgtccttatcaactgagttaagatcacgagga 39842078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 7230340 - 7230273
Alignment:
Q  25 ggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||||||||||  || ||| |||||| ||||||  |||||||||||||||| |||| |||||||||||    
T  7230340 ggtttgaaccccg-gaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggaca 7230273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 14137075 - 14137043
Alignment:
Q  61 gtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||||||||||||||||||| |||||||||||    
T  14137075 gtccttaccaactgagttaagctcacgaggaca 14137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 14197432 - 14197487
Alignment:
Q  25 ggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaag 81  Q
    ||||||||||||  ||||||||||||| ||||||  |||| ||||||||||||||||    
T  14197432 ggtttgaaccccg-gatcttacatatattatgcattgtccctaccaactgagttaag 14197487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 15170140 - 15170168
Alignment:
Q  66 taccaactgagttaagttcacgaggacat 94  Q
    |||||||||||||||||||||||||||||    
T  15170140 taccaactgagttaagttcacgaggacat 15170168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 43034342 - 43034409
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||||| | ||| ||| |||||| ||||||  |||| |||||||||||||||| ||||||||||    
T  43034342 gggtttgaacctc-agaccttgcatatattatgcattgtccataccaactgagttaagctcacgaggac 43034409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 17588414 - 17588355
Alignment:
Q  34 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||||||||| |||||| ||||||  ||||||||||||||||||||| ||||| |||||    
T  17588414 ccccagatcttgcatatattatgcattgtccttaccaactgagttaagctcacggggaca 17588355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 2186427 - 2186491
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 89  Q
    ||||||||||||| ||| |||||||||| |||| |  |||| ||||||||||||||||||||||||    
T  2186427 gggtttgaacccc-agaccttacatatattatgtattgtccataccaactgagttaagttcacgag 2186491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 7464491 - 7464558
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    |||||||||||||  || |||||||||| ||||||  |||| |||||||||||||||| ||||||||||    
T  7464491 gggtttgaaccccg-gaccttacatatattatgcattgtccctaccaactgagttaagctcacgaggac 7464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 53633634 - 53633685
Alignment:
Q  42 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||||||| ||||||   |||||||||||||||||||| |||||||||||    
T  53633634 cttacatatattatgcattatccttaccaactgagttaagctcacgaggaca 53633685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 8127528 - 8127455
Alignment:
Q  20 gtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||| |||||||||||| | | ||| |||||  ||||||  ||||||||||||||||||||| ||||||||||||    
T  8127528 gtcatggtttgaaccccaa-accttgcatattttatgcattgtccttaccaactgagttaagctcacgaggacat 8127455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 41442940 - 41442990
Alignment:
Q  39 gatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 89  Q
    |||||||||||||  |||||  ||||||||||| |||||||||||||||||    
T  41442940 gatcttacatatataatgcattgtccttaccaattgagttaagttcacgag 41442990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 87
Target Start/End: Complemental strand, 54897353 - 54897319
Alignment:
Q  53 tatgcaaggtccttaccaactgagttaagttcacg 87  Q
    ||||||| |||||||||||||||||||||||||||    
T  54897353 tatgcaatgtccttaccaactgagttaagttcacg 54897319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 11436547 - 11436502
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgagga 91  Q
    |||||| |||||||  ||| ||||||||||||||||||||||||||    
T  11436547 catataatatgcaatatccctaccaactgagttaagttcacgagga 11436502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 21160113 - 21160045
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||||||||||| || |||||||||| ||||||   ||| || |||||||||||||||||||| ||||    
T  21160113 gggtttgaaccccc-gaccttacatatattatgcattatccatatcaactgagttaagttcacgacgaca 21160045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 51250269 - 51250302
Alignment:
Q  61 gtccttaccaactgagttaagttcacgaggacat 94  Q
    ||||||||||||||||||||| ||||||||||||    
T  51250269 gtccttaccaactgagttaagctcacgaggacat 51250302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 4216398 - 4216467
Alignment:
Q  22 cagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||||| |||||||  || ||| |||||| ||||||  ||||||| |||||||| ||||||||||||||||    
T  4216398 cagggttcgaacccc--gaccttgcatatattatgcattgtccttatcaactgagctaagttcacgaggaca 4216467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 10922303 - 10922370
Alignment:
Q  19 agtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacg 87  Q
    |||| |||||||||||||  |||||| |||||| ||||||  |||| |||||||||||||||| |||||    
T  10922303 agtcggggtttgaaccccg-gatcttgcatatattatgcattgtccctaccaactgagttaagctcacg 10922370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 16980375 - 16980423
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||| ||||||  |||||||||||||||| |||| ||||||||||||    
T  16980375 catatattatgcattgtccttaccaactgagctaagctcacgaggacat 16980423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 33373752 - 33373820
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||||||||||| ||| |||||||||| |||| |  |||| |||||||||||||||| |||||||||||    
T  33373752 gggtttgaacccc-agaccttacatatattatgaattgtccataccaactgagttaaggtcacgaggaca 33373820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 44293640 - 44293569
Alignment:
Q  20 gtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||| ||||||| |||||||||||||| ||||||  |||  ||||||||||| |||| ||||||||||    
T  44293640 gtcagggttcgaacccc-agatcttacatatattatgcattgtctataccaactgagctaagctcacgaggac 44293569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 15188951 - 15188897
Alignment:
Q  34 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacga 88  Q
    |||||||||||||||||| ||||||  |||| ||| |||||||||||| ||||||    
T  15188951 ccccagatcttacatatattatgcattgtccatactaactgagttaagctcacga 15188897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 39821945 - 39821877
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||||||||||| ||| ||| |||||| ||||||  |||| ||||||||||| |||| |||||||||||    
T  39821945 gggtttgaacccc-agaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 39821877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 44222673 - 44222641
Alignment:
Q  61 gtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||||||||||||| ||||||||||||||||    
T  44222673 gtccttaccaactgagctaagttcacgaggaca 44222641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 36321492 - 36321561
Alignment:
Q  23 agggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    |||||| ||||||||| | ||| |||||| ||||||  |||||||||||||||| |||| ||||||||||    
T  36321492 agggttcgaacccccaaaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggac 36321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 3389214 - 3389155
Alignment:
Q  34 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||||||||| |||||| ||||||  |||| |||||||||||||| |||||||| ||||    
T  3389214 ccccagatcttgcatatattatgcattgtccataccaactgagttatgttcacgaagaca 3389155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 689593 - 689540
Alignment:
Q  40 atcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||||||||| ||| ||  |||| || |||||||||||||||||||||||||    
T  689593 atcttacatatattatacattgtccatatcaactgagttaagttcacgaggaca 689540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 5614826 - 5614758
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||||||||||| || |||||||||| ||||||   ||| || |||||||||||||||||||| ||||    
T  5614826 gggtttgaaccccc-gaccttacatatattatgcattatccatatcaactgagttaagttcacgacgaca 5614758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 6489068 - 6489000
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    ||||||||||||| ||| ||| |||||| ||||||  |||| ||||||||||| |||| |||||||||||    
T  6489068 gggtttgaacccc-agaccttgcatatattatgcattgtccctaccaactgagctaagctcacgaggaca 6489000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 11318195 - 11318260
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 89  Q
    |||||||||||||||||||| ||||||  ||||||   |||||| ||| ||||||||| |||||||    
T  11318195 gggtttgaacccccagatctaacatattttatgcattatccttatcaattgagttaagctcacgag 11318260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 11647237 - 11647196
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacg 87  Q
    |||||| ||||||  |||||||||||||||||||||||||||    
T  11647237 catatattatgcattgtccttaccaactgagttaagttcacg 11647196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 40837939 - 40837972
Alignment:
Q  61 gtccttaccaactgagttaagttcacgaggacat 94  Q
    |||| |||||||||||||||||||||||||||||    
T  40837939 gtccataccaactgagttaagttcacgaggacat 40837972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 23118068 - 23118120
Alignment:
Q  42 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||||||| ||||||  ||||||| ||||||||||||| ||||||| ||||    
T  23118068 cttacatatattatgcattgtccttatcaactgagttaagctcacgagaacat 23118120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 26377006 - 26376958
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||| ||||||  |||||||||||||||| |||||||||| ||||||    
T  26377006 catataatatgcattgtccttaccaactgagctaagttcacggggacat 26376958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 24592846 - 24592913
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||||||| ||| ||| |||||| ||||||  |||| ||||||||||| |||||||||||||||    
T  24592846 gggtttgaacccc-agaccttgcatatattatgcattgtccctaccaactgagctaagttcacgaggac 24592913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 2257023 - 2256965
Alignment:
Q  34 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||| ||| |||||| ||||||  |||| |||||||||||||||| ||||||||||    
T  2257023 ccccagaccttgcatatattatgcattgtccataccaactgagttaagctcacgaggac 2256965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 5676800 - 5676731
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||||||||||||   ||| |||||| ||||||  ||| ||||||||||||||||| ||||||||||||    
T  5676800 gggtttgaacccccacc-cttgcatatattatgcattgtcattaccaactgagttaagctcacgaggacat 5676731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 22359052 - 22359007
Alignment:
Q  39 gatcttacatatagtatgcaaggtccttaccaactgagttaagttc 84  Q
    |||||| |||||| ||||||  ||||||||||||||||||||||||    
T  22359052 gatcttgcatatattatgcattgtccttaccaactgagttaagttc 22359007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 17560296 - 17560248
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||| ||||||| || |||||||||||||||||| ||||||| ||||    
T  17560296 catatattatgcaatgtacttaccaactgagttaagctcacgagaacat 17560248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 18324907 - 18324955
Alignment:
Q  38 agatcttacatatagtatgcaaggtccttaccaactgagttaagttcac 86  Q
    ||||||| |||||| ||||||  ||||||||||||||||||||| ||||    
T  18324907 agatcttgcatatattatgcattgtccttaccaactgagttaagctcac 18324955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 25562006 - 25562066
Alignment:
Q  34 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    ||||||||||| |||||  ||||||  |||||||||||||||| |||||| ||||| ||||    
T  25562006 ccccagatcttgcatattttatgcactgtccttaccaactgagctaagtttacgagaacat 25562066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 45032742 - 45032686
Alignment:
Q  37 cagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||||| |||||| ||||||  |||| ||||||||||| |||| |||||||||||    
T  45032742 cagatcttgcatatattatgcattgtccctaccaactgaggtaagctcacgaggaca 45032686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 30678830 - 30678882
Alignment:
Q  42 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||||||| ||||||  |||| |||||||||||||||| ||||||||||||    
T  30678830 cttacatatattatgcattgtccctaccaactgagttaagctcacgaggacat 30678882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 52267815 - 52267755
Alignment:
Q  35 cccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacatc 95  Q
    |||||| ||| |||||  ||||||  ||||||||||||||||||||| |||||||||||||    
T  52267815 cccagaccttgcatattttatgcattgtccttaccaactgagttaagctcacgaggacatc 52267755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 3509942 - 3510005
Alignment:
Q  26 gtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgag 89  Q
    |||||||||||| || ||| |||||| ||||||  |||| ||||||||||| ||||||||||||    
T  3509942 gtttgaacccccggaccttgcatatattatgcattgtccataccaactgagctaagttcacgag 3510005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 31061924 - 31061971
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||| ||||||  ||||||||||||||||||||||||| |||||||    
T  31061924 catataatatgcattgtccttaccaactgagttaagttcatgaggaca 31061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 18521290 - 18521240
Alignment:
Q  43 ttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||| |||| ||||||  ||||||||||| |||||||||||||||||||||    
T  18521290 ttacgtatattatgcattgtccttaccaattgagttaagttcacgaggaca 18521240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 30798756 - 30798814
Alignment:
Q  34 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    |||| ||||||||||||| ||||||  |||||| |||| ||||||||| ||||||||||    
T  30798756 ccccggatcttacatatattatgcattgtccttgccaaatgagttaagctcacgaggac 30798814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 37944125 - 37944197
Alignment:
Q  19 agtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    |||||||||||||||||   ||||||||||||| ||||||   |||||||||| |||| |||| ||||||||||    
T  37944125 agtcagggtttgaaccctg-gatcttacatatattatgcattatccttaccaattgagataagctcacgaggac 37944197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 8269368 - 8269435
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    |||||||||||||  || ||| |||||| |||| |  |||||||||||||||| |||||||||||||||    
T  8269368 gggtttgaaccccg-gaccttgcatatattatgtattgtccttaccaactgagctaagttcacgaggac 8269435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 49875620 - 49875664
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgagg 90  Q
    |||||| ||||||  ||||||||||||||||||||| ||||||||    
T  49875620 catatattatgcattgtccttaccaactgagttaagctcacgagg 49875664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 9987125 - 9987074
Alignment:
Q  42 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||||||| ||||||  ||||||||||||||||||||| ||||| |||||    
T  9987125 cttacatataatatgcattgtccttaccaactgagttaagctcacggggaca 9987074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 20208159 - 20208112
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| |||||    
T  20208159 catatactatgcaatgtccttaccaactgagttaagtttacgcggaca 20208112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 22102182 - 22102135
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| |||||    
T  22102182 catatactatgcaatgtccttaccaactgagttaagtttacgcggaca 22102135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 10497169 - 10497214
Alignment:
Q  42 cttacatatagtatgcaaggtccttaccaactgagttaagttcacg 87  Q
    |||||||||| ||||||  |||||||| ||||||||||||||||||    
T  10497169 cttacatatattatgcattgtccttacaaactgagttaagttcacg 10497214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 3358431 - 3358383
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||| ||||||  ||||  ||||||||||||||||||||||||||||    
T  3358431 catatattatgcattgtccaaaccaactgagttaagttcacgaggacat 3358383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 7083003 - 7083059
Alignment:
Q  36 ccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||| |||||| ||||||  ||||||||||| |||| |||| ||||||||||    
T  7083003 ccagatcttgcatatattatgcattgtccttaccaattgagctaagctcacgaggac 7083059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 8138459 - 8138526
Alignment:
Q  25 ggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||||||||| ||| |||||||||| ||||||  || |||| |||||||| ||| ||||||||||||    
T  8138459 ggtttgaacccc-agaccttacatatattatgcattgttcttatcaactgagctaaattcacgaggaca 8138526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 24438300 - 24438348
Alignment:
Q  43 ttacatatagtatgcaaggtccttaccaactgagttaagttcacgagga 91  Q
    ||||||||| ||||||   | ||||||||||||||||||||||||||||    
T  24438300 ttacatatattatgcattattcttaccaactgagttaagttcacgagga 24438348  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 28898896 - 28898848
Alignment:
Q  46 catatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||| ||||||  ||||||||||||| ||||||| ||||||||||||    
T  28898896 catatattatgcattgtccttaccaactaagttaagatcacgaggacat 28898848  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 7872757 - 7872815
Alignment:
Q  34 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||| ||| |||||| ||||||  |||||||||||||||| |||||||||| ||||    
T  7872757 ccccagaccttgcatatattatgcattgtccttaccaactgagctaagttcacgtggac 7872815  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 34448606 - 34448679
Alignment:
Q  20 gtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    ||||||||||||||||   || |||||||||| ||||||  ||||  ||||||||||||||| ||||||||||||    
T  34448606 gtcagggtttgaaccctg-gaccttacatatattatgcattgtccaaaccaactgagttaagctcacgaggacat 34448679  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 92
Target Start/End: Original strand, 35571970 - 35572000
Alignment:
Q  62 tccttaccaactgagttaagttcacgaggac 92  Q
    |||||||||||||||||||||||||||||||    
T  35571970 tccttaccaactgagttaagttcacgaggac 35572000  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 46220947 - 46221018
Alignment:
Q  20 gtcagggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggaca 93  Q
    |||||||||||||||||| || |||||||||  ||||||  |||| |||||||||||||||| |||||| ||||    
T  46220947 gtcagggtttgaaccccc-gaccttacatatt-tatgcattgtccataccaactgagttaagctcacgaagaca 46221018  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 5041391 - 5041331
Alignment:
Q  34 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    ||||||| ||| |||||| ||||||  |||| |||||||| ||||||| ||||||||||||    
T  5041391 ccccagaccttgcatatattatgcattgtccataccaactcagttaagctcacgaggacat 5041331  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 5526786 - 5526719
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||||||| | |||||| ||||| ||||||  |||| ||||||||||| |||| ||||||||||    
T  5526786 gggtttgaaccccaa-atcttatatatattatgcattgtccataccaactgagctaagctcacgaggac 5526719  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 7388056 - 7388108
Alignment:
Q  42 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||||||| ||||||  ||||  ||||||||||||||| ||||||||||||    
T  7388056 cttacatatattatgcattgtcccaaccaactgagttaagctcacgaggacat 7388108  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 18223737 - 18223785
Alignment:
Q  39 gatcttacatatagtatgcaaggtccttaccaactgagttaagttcacg 87  Q
    ||||||||||||| |||||||  ||| |||||||||||||||| |||||    
T  18223737 gatcttacatataatatgcaatatccctaccaactgagttaagctcacg 18223785  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 36755058 - 36755007
Alignment:
Q  42 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||||||| ||||||  ||||| ||||||||||||||| ||||||||||||    
T  36755058 cttacatatattatgcattgtcct-accaactgagttaagctcacgaggacat 36755007  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 36760855 - 36760804
Alignment:
Q  42 cttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggacat 94  Q
    |||||||||| ||||||  ||||| ||||||||||||||| ||||||||||||    
T  36760855 cttacatatattatgcattgtcct-accaactgagttaagctcacgaggacat 36760804  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 40187636 - 40187703
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||||| | ||| |||||||||| ||||||  |||| |||||||||||||||| ||| ||||||    
T  40187636 gggtttgaaccgc-agaccttacatatattatgcattgtccctaccaactgagttaagctcatgaggac 40187703  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 40518914 - 40518962
Alignment:
Q  44 tacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    |||||||| ||||||| |||| ||||||||||| |||||||||| ||||    
T  40518914 tacatatattatgcaatgtccctaccaactgagctaagttcacggggac 40518962  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 43346573 - 43346625
Alignment:
Q  34 ccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcac 86  Q
    |||| ||||||||||||| ||||||  |||| ||||||||||| |||||||||    
T  43346573 ccccggatcttacatatattatgcattgtccataccaactgagctaagttcac 43346625  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 15930 - 15997
Alignment:
Q  24 gggtttgaacccccagatcttacatatagtatgcaaggtccttaccaactgagttaagttcacgaggac 92  Q
    ||||||||||||| ||| ||| |||||| ||| ||  ||||||||||| ||||||||| ||||||||||    
T  15930 gggtttgaacccc-agaccttgcatatattatacattgtccttaccaattgagttaagctcacgaggac 15997  T

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