View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10620_low_10 (Length: 317)
Name: NF10620_low_10
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10620_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 78 - 307
Target Start/End: Original strand, 3717084 - 3717313
Alignment:
| Q |
78 |
tcaattaaatgtctttgtccatcattgatgtattcagtccacatgttgatagtgatttacccatggcaaaggctttgctatttgtgctattaaattcaat |
177 |
Q |
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| T |
3717084 |
tcaattaaatgtctttgtccatcattgatgtattcagtccacatgttgatagtgatttacccatggcaaaggctttgctatttgtgctattaaattcaat |
3717183 |
T |
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| Q |
178 |
ttctttatctataatataaataggcatgcatgcccaagagtactattcatgcatttctctgcataatatatattcaaataatagcacttttgcaaattag |
277 |
Q |
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| T |
3717184 |
ttctttatctataatataaataggcatgcatgcccaagagtactattcatgcatttttctgcataatatatattcaaataatagcacttttgcaaattag |
3717283 |
T |
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| Q |
278 |
ttaaatcactcgggaaatattttgcctatg |
307 |
Q |
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| T |
3717284 |
ttaaatcactcgggaaatattttgcctatg |
3717313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 3717039 - 3717099
Alignment:
| Q |
7 |
gaaaggatatatcattttcaannnnnnnngacggatatatcactttcaattaaatgtcttt |
67 |
Q |
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| T |
3717039 |
gaaaggatatatcattttcaattttttttgacggatatatcactttcaattaaatgtcttt |
3717099 |
T |
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