View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10620_low_11 (Length: 305)

Name: NF10620_low_11
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10620_low_11
NF10620_low_11
[»] chr6 (31 HSPs)
chr6 (1-293)||(4490366-4490659)
chr6 (64-293)||(4504408-4504639)
chr6 (87-293)||(3171654-3171862)
chr6 (181-293)||(4480702-4480814)
chr6 (188-293)||(4617038-4617143)
chr6 (181-293)||(4625960-4626072)
chr6 (191-293)||(4516340-4516442)
chr6 (191-293)||(4585655-4585757)
chr6 (191-293)||(4592250-4592352)
chr6 (191-291)||(4601808-4601908)
chr6 (197-293)||(4613729-4613825)
chr6 (191-293)||(4560525-4560627)
chr6 (191-292)||(4579451-4579552)
chr6 (181-293)||(4492964-4493076)
chr6 (181-268)||(4267202-4267289)
chr6 (191-293)||(4570991-4571093)
chr6 (181-293)||(4622151-4622263)
chr6 (187-293)||(4568068-4568177)
chr6 (191-293)||(4563730-4563832)
chr6 (181-293)||(4256623-4256735)
chr6 (182-293)||(4260165-4260276)
chr6 (191-293)||(4598190-4598292)
chr6 (181-278)||(4392052-4392149)
chr6 (181-293)||(4461132-4461244)
chr6 (191-263)||(4557144-4557216)
chr6 (191-293)||(4505876-4505978)
chr6 (191-293)||(4574327-4574429)
chr6 (181-293)||(4469812-4469924)
chr6 (181-224)||(4457644-4457687)
chr6 (191-285)||(4515140-4515234)
chr6 (191-256)||(4299788-4299853)
[»] chr8 (3 HSPs)
chr8 (191-293)||(1674245-1674347)
chr8 (191-286)||(20863861-20863956)
chr8 (195-231)||(16686340-16686376)
[»] chr5 (2 HSPs)
chr5 (191-293)||(28000110-28000212)
chr5 (181-293)||(24103008-24103120)
[»] scaffold0477 (1 HSPs)
scaffold0477 (181-289)||(4701-4809)
[»] scaffold0288 (1 HSPs)
scaffold0288 (191-293)||(3730-3832)
[»] chr7 (1 HSPs)
chr7 (181-293)||(3086429-3086541)
[»] chr3 (1 HSPs)
chr3 (191-293)||(1281133-1281235)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 4490659 - 4490366
Alignment:
Q  1 tacataaaacaaaagagcttcacttagtgttgaacccttttgaaacaatgcattgtnnnnnnntacaaggtatgtgattgcttacaatttagatataatt 100  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  4490659 tacataaaacaaaagatcttcacttagcgttgaacccttttgaaacaatgcattgtaaaaaaatacaaggtatgtgattgcttacaatttagatataatt 4490560  T
Q  101 agaaatctaaatcatgcattgtttgtgctcgcaaaagaaataaaatcaacaagaaaagatcatataaatctaa-nnnnnnnaagcatgacatccttaatc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||    
T  4490559 agaaatctaaatcatgcattgtttgtgctcgcaaaagaaataaaatcaacaagaaaagatcatataaatctaatagtttttaagcatgacatccttaatc 4490460  T
Q  200 actttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4490459 actttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttc 4490366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 64 - 293
Target Start/End: Complemental strand, 4504639 - 4504408
Alignment:
Q  64 tacaaggtatgtgattgcttacaatttagatataattagaaat-ctaaatcatgcattgtttgtgctcgcaaaagaaataaaatcaacaagaaaagatca 162  Q
    ||||| || ||||||||||||||||||||| |||||||| | | |||| | ||||||   ||||||| |||||||||| ||  |||| || |||||||||    
T  4504639 tacaatgtctgtgattgcttacaatttagagataattagcacttctaagttatgcatcaattgtgcttgcaaaagaaacaagttcaataataaaagatca 4504540  T
Q  163 tataaatctaannnnnnn-aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttctt 261  Q
     || |||||||        ||||| ||| |||||||||||||||||||||||||||||||||| |||||| ||||| |||| |||| |||||||||||||    
T  4504539 cattaatctaatattttttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttctt 4504440  T
Q  262 caactccgtcgccttttgcctcatcttctttc 293  Q
    ||||||| | ||||||||||||||||||||||    
T  4504439 caactccatggccttttgcctcatcttctttc 4504408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 87 - 293
Target Start/End: Original strand, 3171654 - 3171862
Alignment:
Q  87 atttagatataattagaaat-ctaaatcatgcattgtttgtgctcgcaaaagaaataaaatcaacaagaaaagatcatataaatctaannnnnnn-aagc 184  Q
    |||||||||||||||||| | |||||| ||||||| |||||||| ||||||||||||||  ||| |||||||||||| || |||||||        ||||    
T  3171654 atttagatataattagaacttctaaattatgcattatttgtgcttgcaaaagaaataaatccaataagaaaagatcacattaatctaatattgtttaagc 3171753  T
Q  185 atgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctca 284  Q
    | ||| |||||||||||||| ||||||||||||||||||| |||||| | ||| || | |||| |||||||||||||||||||| | ||| |||||||||    
T  3171754 aagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggccctttgcctca 3171853  T
Q  285 tcttctttc 293  Q
    |||||||||    
T  3171854 tcttctttc 3171862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 4480702 - 4480814
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||  |||| |||| |||| ||||| |||||||||||||| | |||||||||    
T  4480702 aagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatggccttttgc 4480801  T
Q  281 ctcatcttctttc 293  Q
     ||||||||||||    
T  4480802 ttcatcttctttc 4480814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 188 - 293
Target Start/End: Original strand, 4617038 - 4617143
Alignment:
Q  188 acatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatct 287  Q
    ||||||||||| ||||||| ||||||||||||||||| ||||||  |||| ||||||||| |||||||||||||||||||| | ||||||||| |||| |    
T  4617038 acatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggccttttgcttcattt 4617137  T
Q  288 tctttc 293  Q
    ||||||    
T  4617138 tctttc 4617143  T

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Target: chr6; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 4625960 - 4626072
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||| |||||| ||||||| ||| ||||  ||||||||||||| ||||||| | ||  |||||||| |||||||||||||||||||| | |||||||||    
T  4625960 aagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggccttttgc 4626059  T
Q  281 ctcatcttctttc 293  Q
    |||||||||||||    
T  4626060 ctcatcttctttc 4626072  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4516340 - 4516442
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||||||||| ||||||||||  ||||||| ||||||  |||| |||| |||| |||||||||||||||| ||| | |||||||||||||||||||    
T  4516340 tccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatggccttttgcctcatcttct 4516439  T
Q  291 ttc 293  Q
    |||    
T  4516440 ttc 4516442  T

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Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4585655 - 4585757
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||||||||| |||||||| |||||||||| ||| ||  ||||||||| |||| | |||||||||||||||||  | |||||||||||||||||||    
T  4585655 tccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaactcgattgccttttgcctcatcttct 4585754  T
Q  291 ttc 293  Q
    |||    
T  4585755 ttc 4585757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4592250 - 4592352
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    ||||| |||| ||||||||||||||| ||||||| ||| ||  |||||||||||||| |||||||||||||||||||  | ||||||| |||||||||||    
T  4592250 tccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgcctttttcctcatcttct 4592349  T
Q  291 ttc 293  Q
    |||    
T  4592350 ttc 4592352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 291
Target Start/End: Original strand, 4601808 - 4601908
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||| |||||||||| |||| ||||||||| |||||| ||||| ||| |||||  |||| |||||||||||||| | |||||||||||||||||||    
T  4601808 tccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatggccttttgcctcatcttct 4601907  T
Q  291 t 291  Q
    |    
T  4601908 t 4601908  T

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Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 4613825 - 4613729
Alignment:
Q  197 atcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttctttc 293  Q
    |||||||||||||||||||| ||||||| ||| ||  ||||||||| |||| |||||||||||||||||||  | |||||||||||||| |||||||    
T  4613825 atcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaattgccttttgcctcattttctttc 4613729  T

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Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4560525 - 4560627
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||||||||| ||||||||||||||||||| ||| ||  ||||||||| | || | ||||| ||||||| |||| | |||||||||||||||||||    
T  4560525 tccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggccttttgcctcatcttct 4560624  T
Q  291 ttc 293  Q
    |||    
T  4560625 ttc 4560627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 4579451 - 4579552
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||||||||| |||||||||||||||||||  || ||  ||||||||| |||| |  ||||||||||||||||  | |||||||||||||||||||    
T  4579451 tccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttct 4579550  T
Q  291 tt 292  Q
    ||    
T  4579551 tt 4579552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 4492964 - 4493076
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||| ||||||||| |||||||||||||||||||||||||||| ||||||  ||   |||| |||| |||||||||| ||||||||||| || |||  |    
T  4492964 aagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccgtggcttttctc 4493063  T
Q  281 ctcatcttctttc 293  Q
    |||||||| ||||    
T  4493064 ctcatcttgtttc 4493076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 268
Target Start/End: Complemental strand, 4267289 - 4267202
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactcc 268  Q
    ||||||||| |||||||| ||||||||||||||||||||||||  ||||||  |||| ||||||||  |||||||| |||||||||||    
T  4267289 aagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactcc 4267202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4570991 - 4571093
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||||||||| ||||||||||||||||||| ||||||  ||||||||| |||| | ||||||||||||| |||| |    |||| |||||||||||    
T  4570991 tccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatatttttcctcatcttct 4571090  T
Q  291 ttc 293  Q
    |||    
T  4571091 ttc 4571093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 4622151 - 4622263
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||||||| |||||||| ||||||||||||||  ||||||||| ||||||  | || ||  ||||  ||||||||| |||||||||| | ||||||||     
T  4622151 aagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttttgt 4622250  T
Q  281 ctcatcttctttc 293  Q
    |||||||||||||    
T  4622251 ctcatcttctttc 4622263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 4568068 - 4568177
Alignment:
Q  187 gacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgc---cttcttcttcaactccgtcgccttttgcctc 283  Q
    |||||||||||||||||||||||||||||||||||||  | ||||  |||| |||| || | ||||   ||||||||||||||||   ||||||||||||    
T  4568068 gacatccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctc 4568167  T
Q  284 atcttctttc 293  Q
    ||||| ||||    
T  4568168 atcttttttc 4568177  T

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Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4563730 - 4563832
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    ||||| |||||||||||||||||||||||||||| ||| ||   ||||||||| ||| |  | ||||||||||||||  | |||||||||| ||||||||    
T  4563730 tccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgccttttgccgcatcttct 4563829  T
Q  291 ttc 293  Q
    |||    
T  4563830 ttc 4563832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 4256735 - 4256623
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||||||| |||||||| |||||||||||||||||  |||||  |||| |  | || ||||||| | ||| |||||||||||| ||| |  ||||||||    
T  4256735 aagcatgacctccttaataactttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttcttcaattccatgaccttttgc 4256636  T
Q  281 ctcatcttctttc 293  Q
    |||||||||||||    
T  4256635 ctcatcttctttc 4256623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 293
Target Start/End: Complemental strand, 4260276 - 4260165
Alignment:
Q  182 agcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcc 281  Q
    |||||||| | |||||| |||||||||||||||||  |||||  ||||    | || ||||||||| |||||||| ||||||||||| |  |||||||||    
T  4260276 agcatgacctgcttaataactttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactccatgaccttttgcc 4260177  T
Q  282 tcatcttctttc 293  Q
    ||||||||||||    
T  4260176 tcatcttctttc 4260165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4598190 - 4598292
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||||||||| || |||||||||||||||| ||| || |||||||| | |||| | |||||| ||||||| ||  | | |||||||||||| ||||    
T  4598190 tccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatcaattgtcttttgcctcattttct 4598289  T
Q  291 ttc 293  Q
    |||    
T  4598290 ttc 4598292  T

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Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 4392149 - 4392052
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgcctttt 278  Q
    ||||| ||| |||||||||| |||||||||||||||| |||||  ||||||  |||  |||| ||||  ||||||||||||||||||  |||||||||    
T  4392149 aagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgcctttt 4392052  T

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Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 4461132 - 4461244
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||  ||| ||  |||| || | |||| |  |||||||||| || ||| |  ||||||||    
T  4461132 aagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatgaccttttgc 4461231  T
Q  281 ctcatcttctttc 293  Q
    |||||||||||||    
T  4461232 ctcatcttctttc 4461244  T

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Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 263
Target Start/End: Original strand, 4557144 - 4557216
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttca 263  Q
    |||||||||||||| ||||| ||||||||||||| ||||||  ||||||||| |||| | |||||| ||||||    
T  4557144 tccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttca 4557216  T

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Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4505876 - 4505978
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||| |||||||||||||||||| |||||| ||||||  |||| || | ||||  |||| |||| ||||||||| |  |||||| ||||||||| |    
T  4505876 tccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatgacctttttcctcatcttgt 4505975  T
Q  291 ttc 293  Q
    |||    
T  4505976 ttc 4505978  T

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Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 4574327 - 4574429
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||||||||| ||||||||  ||||||||| ||| ||  ||||||||| | || |  |||||||||||| |||  | || ||||||||||||||||    
T  4574327 tccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatggctttttgcctcatcttct 4574426  T
Q  291 ttc 293  Q
    |||    
T  4574427 ttc 4574429  T

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Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 4469812 - 4469924
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||| |||||||||||| ||||||||||||||| ||||||||  ||| ||  |||| || | |||| |  |||||||||| |||||| |   ||||| |    
T  4469812 aagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttttcc 4469911  T
Q  281 ctcatcttctttc 293  Q
    |||||||||||||    
T  4469912 ctcatcttctttc 4469924  T

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Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 4457644 - 4457687
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaac 224  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||    
T  4457644 aagcatgacttccttagtcactttgtccaagttcaagtatgaac 4457687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 4515234 - 4515140
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcat 285  Q
    ||||| ||||||||||||||||||| |||||||   || || ||||| |||| |||  |||||||||| ||||||||| |  |||||| ||||||    
T  4515234 tccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccataacctttttcctcat 4515140  T

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Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 4299853 - 4299788
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttc 256  Q
    |||||||| |||||||||||||||||||| |||| ||||||  |  | ||||||||| ||||||||    
T  4299853 tccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc 4299788  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 1674245 - 1674347
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||| ||||||||| |||||||||||||||| ||| | ||||||||||||||||| |    
T  1674245 tccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatggccttttgcctcatctttt 1674344  T
Q  291 ttc 293  Q
    |||    
T  1674345 ttc 1674347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 191 - 286
Target Start/End: Complemental strand, 20863956 - 20863861
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatc 286  Q
    |||||||||||||||||||||||||| ||||||| |||  |  |||| |||| |||| |||||||||||||||||||  | | |||||||||||||    
T  20863956 tccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttcttcaactcatttgtcttttgcctcatc 20863861  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 16686376 - 16686340
Alignment:
Q  195 taatcactttgtccaagttcatgtatgaactaccacc 231  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  16686376 taatcactttttccaagttcatgtatgaacaaccacc 16686340  T

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Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 28000212 - 28000110
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||| ||||||||| ||||||| |||||||||||| | ||||||||||||||||| |    
T  28000212 tccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatggccttttgcctcatctttt 28000113  T
Q  291 ttc 293  Q
    |||    
T  28000112 ttc 28000110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 24103008 - 24103120
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||||||| |||||||| ||||||||||||||||||||||||  ||||||   ||| ||||||||  ||||||||||||| ||||||    ||||||||    
T  24103008 aagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagaccttttgc 24103107  T
Q  281 ctcatcttctttc 293  Q
     ||||| ||||||    
T  24103108 ttcatcgtctttc 24103120  T

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Target: scaffold0477 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 181 - 289
Target Start/End: Complemental strand, 4809 - 4701
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  |||||    || ||||||||| |||||||||||||||||||| | |||||||||    
T  4809 aagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttttgc 4710  T
Q  281 ctcatcttc 289  Q
    |||||||||    
T  4709 ctcatcttc 4701  T

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Target: scaffold0288 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 3832 - 3730
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    |||||||| |||||||||| |||||||||||||| ||||||  |||| ||||||||| ||||||||||||| ||||||   |||||||||||||||||||    
T  3832 tccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggccttttgcctcatcttct 3733  T
Q  291 ttc 293  Q
    |||    
T  3732 ttc 3730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 3086429 - 3086541
Alignment:
Q  181 aagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgc 280  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||| ||||||||  || ||||||||  |||| |||||||| ||||| |   | ||||||    
T  3086429 aagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactctgcgacattttgc 3086528  T
Q  281 ctcatcttctttc 293  Q
    |||||||||||||    
T  3086529 ctcatcttctttc 3086541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 1281133 - 1281235
Alignment:
Q  191 tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgttctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct 290  Q
    ||||||||||||||||| |||||||||||||||| ||||||  |||| ||||||||| | |||  ||||||||| ||| | |||||||  ||||| ||||    
T  1281133 tccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatggccttttctctcatattct 1281232  T
Q  291 ttc 293  Q
    |||    
T  1281233 ttc 1281235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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