View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10620_low_13 (Length: 271)

Name: NF10620_low_13
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10620_low_13
NF10620_low_13
[»] chr5 (2 HSPs)
chr5 (49-134)||(17088412-17088495)
chr5 (24-56)||(17088219-17088251)
[»] chr8 (1 HSPs)
chr8 (62-131)||(29268973-29269042)
[»] chr4 (1 HSPs)
chr4 (26-93)||(5103760-5103828)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 17088412 - 17088495
Alignment:
Q  49 ccatatatgactatttttatgtggaaataatggctcaaaggcatgcacttttagtcaatggataactgtgatttccatgatctatg 134  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||    
T  17088412 ccatatatgaatatttttatgtggaaataatggctcaaag-ca-gcacttttagtcaatggataactgtgatttgcatgatctatg 17088495  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 17088219 - 17088251
Alignment:
Q  24 acattcatattttggtccacaatgtccatatat 56  Q
    ||||||||||||| |||||||||||||||||||    
T  17088219 acattcatatttttgtccacaatgtccatatat 17088251  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 29269042 - 29268973
Alignment:
Q  62 tttttatgtggaaataatggctcaaaggcatgcacttttagtcaatggataactgtgatttccatgatct 131  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||| ||| |||||||||    
T  29269042 tttttatgtggaaataatggctcaaaggaatgcacttttagtcattggcttactgtaattaccatgatct 29268973  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 5103760 - 5103828
Alignment:
Q  26 attcatat-tttggtccacaatgtccatatatgactatttttatgtggaaataatggctcaaaggcatg 93  Q
    |||||||| |||| |||||||  ||||||||||| | | ||||||| ||||||||||||||||||||||    
T  5103760 attcatatatttgatccacaagttccatatatgattctatttatgttgaaataatggctcaaaggcatg 5103828  T

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