View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10620_low_14 (Length: 270)
Name: NF10620_low_14
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10620_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 3702426 - 3702187
Alignment:
| Q |
18 |
agtagcggtccatcgggataaaggcatcctcttctaccagctcttcctgcaatttgctggaacagtaagaattttgctaccattgtacttcgaaaggcta |
117 |
Q |
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| T |
3702426 |
agtagcggtccatcgggataaaggcatcctcttctaccagctcttcctgcaatttgctggaacagtaagaattttgccaccattgtacttcgaaaggcta |
3702327 |
T |
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| Q |
118 |
ctgaaaatcaccctttgaatgttgaggttcaggcccgtccccatttgatcattgaacaaatttctggtggcaaagttctcacaatgtttactcacacaac |
217 |
Q |
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| T |
3702326 |
ctgaaaatcaccctttgaatgttgaggttcaggcccgtccccatttgatcattgaacaaatttctggtggcaaagttctcacaatgtttactcacacaac |
3702227 |
T |
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| Q |
218 |
tcatctcgtaaatcttgacatgcctttccaagcagggtct |
257 |
Q |
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| T |
3702226 |
tcatctcctaaatcttgacatgcctttccaagcagtgtct |
3702187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 3713791 - 3713740
Alignment:
| Q |
42 |
catcctcttctaccagctcttcctgcaatttgctggaacagtaagaattttg |
93 |
Q |
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| T |
3713791 |
catcctcttccaccagcacttcctgcaatttgctggaacagtaagaattttg |
3713740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 3717125 - 3717062
Alignment:
| Q |
28 |
catcgggataaaggcatcctcttctaccagctcttcctgcaatttgctggaacagtaagaattttg |
93 |
Q |
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| T |
3717125 |
catcaggataaaggcatactc--ctaccagctcttcctgcaatttgctggaacaataagaattttg |
3717062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 3708392 - 3708327
Alignment:
| Q |
84 |
aagaattttgctaccattgtacttcgaaaggctactgaaaatcaccctttgaatgttgaggttcag |
149 |
Q |
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| T |
3708392 |
aagaattttgtcaccattgtacttcgaaaggctattgaaaatcacccttcaaatgttgagattcag |
3708327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 3705734 - 3705689
Alignment:
| Q |
25 |
gtccatcgggataaaggcatcctcttctaccagctcttcctgcaat |
70 |
Q |
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| T |
3705734 |
gtccatcaggataaaggcatcctcttctatcagatcttcctgcaat |
3705689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 3713693 - 3713608
Alignment:
| Q |
176 |
aatttctggtggcaaagttctcacaatgtttactcacacaactcatctcgtaaatcttgacatgcctttccaagcagggtctctgcttc |
264 |
Q |
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| T |
3713693 |
aatttctggtggcaaa--tctcataatgttg-ctcacacaactcatctcctgtatcttaacatacatttccaagcagggtctttgcttc |
3713608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 3708460 - 3708416
Alignment:
| Q |
25 |
gtccatcgggataaaggcatcctcttctaccagctcttcctgcaa |
69 |
Q |
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| T |
3708460 |
gtccatcgagataaaggcatcctcttcaaccggctcttcttgcaa |
3708416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 3520324 - 3520411
Alignment:
| Q |
73 |
gctggaacagtaagaattttgctaccattgtacttcgaaaggctactgaaaatcaccctttgaatgttgaggttcaggcccgtcccca |
160 |
Q |
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| T |
3520324 |
gctggaacaggaagaattttgtcaccgttgtactttgaaaggttattaaaaatcacccttcgaatgttaaggttaaggcccatcccca |
3520411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 3520262 - 3520312
Alignment:
| Q |
25 |
gtccatcgggataaaggcatcctcttctaccagctcttcctgcaatttgct |
75 |
Q |
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| T |
3520262 |
gtccatcgggataaacacatcctcttcgaccagctcttccggcaatttgct |
3520312 |
T |
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