View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10620_low_15 (Length: 264)

Name: NF10620_low_15
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10620_low_15
NF10620_low_15
[»] chr1 (2 HSPs)
chr1 (1-248)||(4686083-4686330)
chr1 (179-215)||(49848563-49848599)
[»] chr3 (1 HSPs)
chr3 (113-244)||(47846516-47846647)
[»] chr4 (3 HSPs)
chr4 (154-244)||(40253988-40254078)
chr4 (160-242)||(53557699-53557781)
chr4 (166-242)||(21174545-21174621)
[»] chr5 (1 HSPs)
chr5 (157-242)||(5113858-5113943)
[»] chr7 (1 HSPs)
chr7 (157-210)||(2461543-2461596)
[»] chr2 (1 HSPs)
chr2 (173-242)||(40819440-40819509)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 4686330 - 4686083
Alignment:
Q  1 acatgtggtaaatatggttgttcttgaaccaaatttgataaggaaaattcattactactcatcactctattattattgctttcttgcttaacaatagcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4686330 acatgtggtaaatatggttgttcttgaaccaaatttgataaggaaaattcattactactcatcactctattattattgctttcttgcttaacaatagcac 4686231  T
Q  101 cattatttcctctattacgtgcttgttgttgttgatctttacggtgtttccccaaaagcttctttttcaaccttgtattccaatagttctttatgtcatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4686230 cattatttcctctattacgtgcttgttgttgttgatctttacggtgtttccccaaaagcttctttttcaaccttgtattccaatagttctttatgtcatt 4686131  T
Q  201 atcagttcttcctggcaattgagctgcaattatcgaccacctgctttc 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4686130 atcagttcttcctggcaattgagctgcaattatcgaccacctgctttc 4686083  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 49848563 - 49848599
Alignment:
Q  179 tccaatagttctttatgtcattatcagttcttcctgg 215  Q
    |||||||||||||||| |||||||| |||||||||||    
T  49848563 tccaatagttctttatctcattatctgttcttcctgg 49848599  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 113 - 244
Target Start/End: Original strand, 47846516 - 47846647
Alignment:
Q  113 tattacgtgcttgttgttgttgatctttacggtgtttccccaaaagcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcc 212  Q
    ||||||||||||||  |||||| |||||||| || ||||| ||||||||||||||||   |||| ||||||||||||||||| |||||||| ||||||||    
T  47846516 tattacgtgcttgtaattgttgttctttacgatgcttcccaaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcc 47846615  T
Q  213 tggcaattgagctgcaattatcgaccacctgc 244  Q
     ||||||||| | ||||| | |||||| ||||    
T  47846616 gggcaattgacccgcaatcaccgaccatctgc 47846647  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 244
Target Start/End: Original strand, 40253988 - 40254078
Alignment:
Q  154 aaaagcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattgagctgcaattatcgaccacctgc 244  Q
    ||||| ||||| |||||| |||| ||||||||||||||||| |||||||| |||| |||||| ||||| ||||| || || ||||||||||    
T  40253988 aaaagtttcttcttcaactttgtgttccaatagttctttatatcattatccgttcgtcctggtaattgcgctgctataatggaccacctgc 40254078  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 53557781 - 53557699
Alignment:
Q  160 ttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattgagctgcaattatcgaccacct 242  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||| || || ||||| ||||| || ||||||||    
T  53557781 ttcttcttcaatcttgtgttccaatagttttttatgtcattgtctgttcttccaggtaactgagcagcaataatggaccacct 53557699  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 21174621 - 21174545
Alignment:
Q  166 ttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattgagctgcaattatcgaccacct 242  Q
    |||||| |||| |||||||||||||| || ||||| || || || ||||| ||||||||||| || || ||||||||    
T  21174621 ttcaactttgtgttccaatagttcttgatatcattgtctgtcctacctggtaattgagctgctataattgaccacct 21174545  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 242
Target Start/End: Complemental strand, 5113943 - 5113858
Alignment:
Q  157 agcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcctggcaattgagctgcaattatcgaccacct 242  Q
    |||||||| |||| ||| || ||||| ||||||||||| |||||||| |||| |||||| ||||| ||||| || || ||||||||    
T  5113943 agcttcttcttcagcctagtgttccagtagttctttatatcattatccgttcgtcctggtaattgtgctgctatgatagaccacct 5113858  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 2461596 - 2461543
Alignment:
Q  157 agcttctttttcaaccttgtattccaatagttctttatgtcattatcagttctt 210  Q
    ||||||||||||||    |||||||||||||| |||||||||||||| ||||||    
T  2461596 agcttctttttcaaatgagtattccaatagttttttatgtcattatctgttctt 2461543  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 40819440 - 40819509
Alignment:
Q  173 ttgtattccaatagttctttatgtcattatcagttcttcctggcaattgagctgcaattatcgaccacct 242  Q
    |||| ||||| ||||| || || |||||||||||||||||||| |||||||| || || || ||||||||    
T  40819440 ttgtgttccagtagtttttgatatcattatcagttcttcctggtaattgagcagctataattgaccacct 40819509  T

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