View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10620_low_2 (Length: 509)
Name: NF10620_low_2
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10620_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 296 - 499
Target Start/End: Original strand, 37280695 - 37280898
Alignment:
| Q |
296 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattgaagatga |
395 |
Q |
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| T |
37280695 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattgaagatga |
37280794 |
T |
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| Q |
396 |
cggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaagtggcggtattgtggcgggaccccttggtggacctgtgcctccaggtgcc |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37280795 |
cggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaagtggcggtattgtggcgggaccccttggtggacctgtgcctccaggtgcc |
37280894 |
T |
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| Q |
496 |
tttg |
499 |
Q |
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|||| |
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| T |
37280895 |
tttg |
37280898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 37280410 - 37280614
Alignment:
| Q |
17 |
actaaccataagcatttctagcnnnnnnnctaactataaccatatattgttgatgtatacttccataaatagttgaaatgtgaggtgtaagagtgtttga |
116 |
Q |
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| T |
37280410 |
actaaccataagcatttctagcaaaaaaactaactataaccatatattgttgatgtatacttccataaatagttaaaatgtgaggtgtaagagtgtttga |
37280509 |
T |
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| Q |
117 |
taccaatgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaatactccaacccaccaacattc |
216 |
Q |
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| T |
37280510 |
taccaatgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaatactccaacccaccaacattc |
37280609 |
T |
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| Q |
217 |
cttta |
221 |
Q |
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||||| |
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| T |
37280610 |
cttta |
37280614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 306 - 497
Target Start/End: Original strand, 37261133 - 37261321
Alignment:
| Q |
306 |
ttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattgaagatgacggcgatgaa |
405 |
Q |
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||||||| |||| |||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37261133 |
ttcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtcttgcctatgctgcagatgcaccagcacctattgaagatgacggcgatgaa |
37261232 |
T |
|
| Q |
406 |
tatcttgttggaactagaagcggggatcctccttcagcaagtggcggtattgtggcgggaccccttggtggacctgtgcctccaggtgcctt |
497 |
Q |
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| T |
37261233 |
tatcttgttggaactagaagcggggatcctccttcagca---ggcggtattgtggcgggacccattggtggacccgtgcctcctggtgcctt |
37261321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 296 - 497
Target Start/End: Original strand, 37264896 - 37265094
Alignment:
| Q |
296 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattgaagatga |
395 |
Q |
| |
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||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
37264896 |
tcatggcacattcaaggtatgtcgttattctcgcccttgtaatgttggccatgattggtctcgcctatgctgcagatgcaccagcacctattgaagatga |
37264995 |
T |
|
| Q |
396 |
cggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaagtggcggtattgtggcgggaccccttggtggacctgtgcctccaggtgcc |
495 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| |||||||||| |||||||| |||||| |
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| T |
37264996 |
cggcgatgaatatcttgttggaactagaagtggggatcctccttcagca---ggtggtattgtggcgggacccattggtggacccgtgcctccgggtgcc |
37265092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 296 - 445
Target Start/End: Original strand, 37276846 - 37277007
Alignment:
| Q |
296 |
tcatggcacgttcaaggcatgttgttattctggcccttgtaatgttggccatgattggccttacctatgctgcagatgcaccagcacctattga------ |
389 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
37276846 |
tcatggcacattcaaggcatgttgttattctagcccttgtaatgttagccatgattggccttgcctatgctgcagatgcaccagcacctgctgagagtga |
37276945 |
T |
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| Q |
390 |
------agatgacggcgatgaatatcttgttggaactagaagcggggatcctccttcagcaa |
445 |
Q |
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||| || | ||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37276946 |
ctttctagaagatgacgacgaatatcttgttggaactagaaagggggatcctccttcagcaa |
37277007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 37276671 - 37276794
Alignment:
| Q |
98 |
gaggtgtaagagtgtttgataccaatgattttcctcatgttttggaatacctttgaactgtaataattttatgtatattatgaaccctttcctacgaata |
197 |
Q |
| |
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||||||||||| ||||||||||||| || |||||||| || ||||| |||||||||| | ||||||||||||||||||| || | |||||||||| || |
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| T |
37276671 |
gaggtgtaagaatgtttgataccaacgactttcctcacacttcggaatccctttgaactattataattttatgtatattatcaatcatttcctacgacta |
37276770 |
T |
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| Q |
198 |
ctccaacccaccaacattccttta |
221 |
Q |
| |
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|||||| ||||||||||| ||||| |
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| T |
37276771 |
ctccaatccaccaacatttcttta |
37276794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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