View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10620_low_20 (Length: 233)

Name: NF10620_low_20
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10620_low_20
NF10620_low_20
[»] chr1 (9 HSPs)
chr1 (24-219)||(35215878-35216072)
chr1 (19-110)||(35207781-35207872)
chr1 (130-219)||(35190371-35190460)
chr1 (124-212)||(35147357-35147445)
chr1 (19-56)||(35247611-35247648)
chr1 (31-82)||(35189915-35189966)
chr1 (138-215)||(35208145-35208225)
chr1 (19-63)||(35199449-35199493)
chr1 (132-180)||(35199933-35199981)
[»] chr3 (1 HSPs)
chr3 (133-169)||(53924390-53924426)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 35215878 - 35216072
Alignment:
Q  24 gcattggttccattttaatcaatattgttactcaagcacattctatcacagactagtgaatgcggaatggagtgtcggtccttcttcgttttatgttcca 123  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35215878 gcattggttccattt-aatcaatattgttactcaagcacattctatcacagactagtgaatgcggaatggagtgtcggtccttcttcgttttatgttcca 35215976  T
Q  124 gcttactggtcttacttaggcctaacttctattcctgcaagcaagagatcattcttccaataatctctctgcttaacattcatcgggacttcatct 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  35215977 gcttactggtcttacttaggcctaacttctattcctgcaagcaagagatctttcttccaataatctctctgcttaacattcatcaggacttcatct 35216072  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 35207781 - 35207872
Alignment:
Q  19 ttaaggcattggttccattttaatcaatattgttactcaagcacattctatcacagactagtgaatgcggaatggagtgtcggtccttcttc 110  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||||||  ||| | | |||| |||| |||||||||    
T  35207781 ttaaggcattgcttccatttaaatcaatattgttacttaagcacagtctatcacagactagtgcctgccggaaggagagtcgatccttcttc 35207872  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 35190371 - 35190460
Alignment:
Q  130 tggtcttacttaggcctaacttctattcctgcaagcaagagatcattcttccaataatctctctgcttaacattcatcgggacttcatct 219  Q
    |||||||||||||||||||||||||||||| |||| |||||| |  ||||||||| || | ||| ||||||||||||  |||||||||||    
T  35190371 tggtcttacttaggcctaacttctattccttcaagaaagagacctctcttccaattatttgtctccttaacattcatttggacttcatct 35190460  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 35147357 - 35147445
Alignment:
Q  124 gcttactggtcttacttaggcctaacttctattcctgcaagcaagagatcattcttccaataatctctctgcttaacattcatcgggac 212  Q
    ||||| |||||||||||||||||||||||||||||| |||  |||||| || ||||||||| || | ||| ||||||||||||| ||||    
T  35147357 gcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaattatttgtctccttaacattcatcaggac 35147445  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 35247648 - 35247611
Alignment:
Q  19 ttaaggcattggttccattttaatcaatattgttactc 56  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  35247648 ttaaggcattggttctattttaatcaatattgttactc 35247611  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 35189915 - 35189966
Alignment:
Q  31 ttccattttaatcaatattgttactcaagcacattctatcacagactagtga 82  Q
    |||||||| |||||||| ||||||||||||||  ||||||||| ||||||||    
T  35189915 ttccatttaaatcaatactgttactcaagcacgatctatcacaaactagtga 35189966  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 35208145 - 35208225
Alignment:
Q  138 cttaggcctaacttctatt---cctgcaagcaagagatcattcttccaataatctctctgcttaacattcatcgggacttc 215  Q
    |||||||||||||||||||   ||| | || |||||| | ||||||||||||| | ||| ||||||||||||| |||||||    
T  35208145 cttaggcctaacttctattattccttctagaaagagacctttcttccaataatttgtctccttaacattcatctggacttc 35208225  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 35199449 - 35199493
Alignment:
Q  19 ttaaggcattggttccattttaatcaatattgttactcaagcaca 63  Q
    ||||| ||||| ||||| || ||||||||||||||||||||||||    
T  35199449 ttaagacattgcttccacttaaatcaatattgttactcaagcaca 35199493  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 180
Target Start/End: Original strand, 35199933 - 35199981
Alignment:
Q  132 gtcttacttaggcctaacttctattcctgcaagcaagagatcattcttc 180  Q
    ||||||||||||||| |||||||||||| |||| |||||| || |||||    
T  35199933 gtcttacttaggcctgacttctattccttcaagaaagagaccactcttc 35199981  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 53924426 - 53924390
Alignment:
Q  133 tcttacttaggcctaacttctattcctgcaagcaaga 169  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  53924426 tcttacttaggcctaacttctattccttcaagaaaga 53924390  T

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