View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10620_low_21 (Length: 231)

Name: NF10620_low_21
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10620_low_21
NF10620_low_21
[»] chr5 (3 HSPs)
chr5 (41-218)||(35305284-35305463)
chr5 (125-218)||(21255998-21256089)
chr5 (7-44)||(21255907-21255944)
[»] chr1 (3 HSPs)
chr1 (41-218)||(18703692-18703870)
chr1 (41-218)||(9906483-9906661)
chr1 (7-44)||(18703882-18703919)
[»] chr4 (1 HSPs)
chr4 (41-218)||(5444036-5444209)
[»] chr8 (6 HSPs)
chr8 (123-218)||(4677268-4677363)
chr8 (125-218)||(7275810-7275901)
chr8 (125-218)||(26174802-26174894)
chr8 (41-78)||(29865087-29865124)
chr8 (41-83)||(7275901-7275943)
chr8 (41-83)||(26174760-26174802)
[»] chr7 (3 HSPs)
chr7 (41-218)||(7734612-7734783)
chr7 (141-218)||(41832000-41832075)
chr7 (41-83)||(41831942-41831984)
[»] scaffold1412 (2 HSPs)
scaffold1412 (125-218)||(451-542)
scaffold1412 (41-83)||(542-584)
[»] scaffold0001 (2 HSPs)
scaffold0001 (125-218)||(145310-145401)
scaffold0001 (41-83)||(145401-145443)
[»] chr6 (2 HSPs)
chr6 (125-218)||(6823722-6823813)
chr6 (41-83)||(6823813-6823855)
[»] chr2 (5 HSPs)
chr2 (125-218)||(24038837-24038928)
chr2 (125-218)||(31270130-31270221)
chr2 (41-83)||(31270221-31270263)
chr2 (13-44)||(24038752-24038783)
chr2 (42-83)||(24038796-24038837)
[»] scaffold0525 (2 HSPs)
scaffold0525 (141-218)||(6591-6666)
scaffold0525 (41-83)||(6682-6724)
[»] chr3 (1 HSPs)
chr3 (157-218)||(42657468-42657527)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 35305463 - 35305284
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttctttgtt--tgttgacatgccctgtagtttaccggttgcatttggttcc 138  Q
    |||||||||||||||||  ||||||||||| |||| |||||||| |||||  ||||||  ||||||||||||||||||||||| |||| ||||||||||     
T  35305463 atggtttgaagacacattgcatggctatgcatctctattggctcattgttcttttgttgctgttgacatgccctgtagtttacaggtttcatttggttct 35305364  T
Q  139 ttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  35305363 ttttgtctcggctcgacattggagggcatctctttttatatctcttggaaccttgatcttgttgcttcagggtacctttg 35305284  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 21255998 - 21256089
Alignment:
Q  125 ttgcatttggttccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  21255998 ttgcatttggtttttcttgtctcggctcggcattggagggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttg 21256089  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 21255907 - 21255944
Alignment:
Q  7 cattgattttgacctatggtttgaatgcatcaacatgg 44  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  21255907 cattggttttggcctatggtttgaatgcatcaacatgg 21255944  T

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Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 18703870 - 18703692
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttct-ttgtt--tgttgacatgccctgtagtttaccggttgcatttggttc 137  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||  ||||||||||||||||||  ||| ||||||||||||||     
T  18703870 atggtttgaagacacatcacatggctatgcatctctattggctccttgtttttgttgttgttgttgacatgccctgtagcatacaggttgcatttggttt 18703771  T
Q  138 cttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
     | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||    
T  18703770 ttcttgtctcggctcggcattggagggcatctcttttt-tatct-ttggaaccttggtcttgttgcttcatggtatctttg 18703692  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 218
Target Start/End: Complemental strand, 9906661 - 9906483
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttctttgtttgttg-----acatgccctgtagtttaccggttgcatttggt 135  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||     |||||||||||||| ||| |||||||||||||    
T  9906661 atggtttgaagacatatcacatggctatgcatctccattggctccttgtttttttttttgttgctgttacatgccctgtagtatacaggttgcatttggt 9906562  T
Q  136 tccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    |  | ||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  9906561 t--tcttgtctcagctcggcattggagggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttg 9906483  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 18703919 - 18703882
Alignment:
Q  7 cattgattttgacctatggtttgaatgcatcaacatgg 44  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  18703919 cattggttttggcctatggtttgaatgcatcaacatgg 18703882  T

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Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 5444036 - 5444209
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttctttgtttg---ttgacatgccctgtagtttaccggttgcatttggttc 137  Q
    ||||||||||||||||||||||||| ||||      ||||||||||||||| ||||||||   ||||||||||||||||| |||  |||||||||||||     
T  5444036 atggtttgaagacacatcacatggccatgc------attggctccttgtttttttgtttgctgttgacatgccctgtagtatacaagttgcatttggtta 5444129  T
Q  138 cttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
     |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5444130 -ttttgtctcgactcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtgcctttg 5444209  T

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Target: chr8 (Bit Score: 92; Significance: 8e-45; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 4677268 - 4677363
Alignment:
Q  123 ggttgcatttggttccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4677268 ggttgcatttggttctttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 4677363  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 7275901 - 7275810
Alignment:
Q  125 ttgcatttggttccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||  | |||||||||||||||||||||| |||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  7275901 ttgcatttggtttttcttgtctcggctcggcattggagcgcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttg 7275810  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 26174802 - 26174894
Alignment:
Q  125 ttgcatttggttccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||  | |||||||||||| |||| ||||||||||||||||  ||||| ||||||||||||||||||  ||||||||||||||||    
T  26174802 ttgcatttggtttttcttgtctcggctcagcatcggagggcatctcttttcttatct-ttggaaccttggtcttgtcacttcatggtacctttg 26174894  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 29865124 - 29865087
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccat 78  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29865124 atggtttgaagacacatcacatggctatgcctctccat 29865087  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 7275943 - 7275901
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggct 83  Q
    ||||||||||||||| |||||||||||||| |||| |||||||    
T  7275943 atggtttgaagacacctcacatggctatgcatctctattggct 7275901  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 26174760 - 26174802
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggct 83  Q
    |||||||||||||| ||||||||||||||| |||| |||||||    
T  26174760 atggtttgaagacatatcacatggctatgcatctctattggct 26174802  T

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Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 41 - 218
Target Start/End: Original strand, 7734612 - 7734783
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttctttgtttgttgacatgccctgtagtttaccggttgcatttggttcctt 140  Q
    |||||||||||||||||||||||||||||| |||||||||| || || ||| ||| ||||   |||||||||||||||||| |||||| |||||||  ||    
T  7734612 atggtttgaagacacatcacatggctatgcatctccattggatctttttttttttttttg---acatgccctgtagtttacaggttgcttttggttattt 7734708  T
Q  141 ttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    |   |||||||| |||||||||||| ||  ||| |||||||||| |||||| ||||||||||||||||||||||||||    
T  7734709 t---ctcggctcagcattggagggcgtccttttctatatctcttagaacctaggtcttgttgcttcatggtacctttg 7734783  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 41832000 - 41832075
Alignment:
Q  141 ttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  41832000 ttgtctcagctcggcattggagggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttg 41832075  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 41831942 - 41831984
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggct 83  Q
    ||||||||||||||| |||||||||||||| |||| |||||||    
T  41831942 atggtttgaagacacctcacatggctatgcatctctattggct 41831984  T

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Target: scaffold1412 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 542 - 451
Alignment:
Q  125 ttgcatttggttccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||  | |||||| |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  542 ttgcatttggtttttcttgtcttggctcggcattggagggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttg 451  T

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Target: scaffold1412; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 584 - 542
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggct 83  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  584 atggtttgaagacacatcacatggctatgcatctctattggct 542  T

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Target: scaffold0001 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 145401 - 145310
Alignment:
Q  125 ttgcatttggttccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||  | |||||| |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  145401 ttgcatttggtttttcttgtcttggctcggcattggagggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttg 145310  T

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Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 145443 - 145401
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggct 83  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  145443 atggtttgaagacacatcacatggctatgcatctctattggct 145401  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 6823813 - 6823722
Alignment:
Q  125 ttgcatttggttccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||| |||||    
T  6823813 ttgcatttggtttttcttgtctcggctcggcattggagggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtatctttg 6823722  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 6823855 - 6823813
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggct 83  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  6823855 atggtttgaagacacatcacatggctatgcatctctattggct 6823813  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 24038837 - 24038928
Alignment:
Q  125 ttgcatttggttccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||  | ||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  24038837 ttgcatttggtttttcttgtctcagctcggcattggagggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttg 24038928  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 31270221 - 31270130
Alignment:
Q  125 ttgcatttggttccttttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||||| || || ||||||||||| | ||||||||| ||||||||||||    
T  31270221 ttgcatttggtttttcttgtctcggctcggcattggagggcatctcttttt-taact-ttggaaccttgtttttgttgctttatggtacctttg 31270130  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 31270263 - 31270221
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggct 83  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  31270263 atggtttgaagacacatcacatggctatgcatctcgattggct 31270221  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 24038752 - 24038783
Alignment:
Q  13 ttttgacctatggtttgaatgcatcaacatgg 44  Q
    ||||||||||||||||||||||||||||||||    
T  24038752 ttttgacctatggtttgaatgcatcaacatgg 24038783  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 24038796 - 24038837
Alignment:
Q  42 tggtttgaagacacatcacatggctatgcctctccattggct 83  Q
    |||||||||||||| |||||||||||||| |||| |||||||    
T  24038796 tggtttgaagacacctcacatggctatgcatctctattggct 24038837  T

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Target: scaffold0525 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 6666 - 6591
Alignment:
Q  141 ttgtctcggctcggcattggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||    
T  6666 ttgtctcagctcggcattggagggcatctcttttt-taact-ttggaaccttggtcttgttgcttcatggtacctttg 6591  T

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Target: scaffold0525; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 6724 - 6682
Alignment:
Q  41 atggtttgaagacacatcacatggctatgcctctccattggct 83  Q
    ||||||||||||||| |||||||||||||| |||| |||||||    
T  6724 atggtttgaagacacctcacatggctatgcatctctattggct 6682  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 42657527 - 42657468
Alignment:
Q  157 ttggagggcatctctttttatatctcttggaaccttggtcttgttgcttcatggtacctttg 218  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  42657527 ttggagggcatctcttttt-tatct-ttggaaccttggtcttgttgcttcatggtacctttg 42657468  T

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