View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10620_low_22 (Length: 229)

Name: NF10620_low_22
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10620_low_22
NF10620_low_22
[»] chr8 (1 HSPs)
chr8 (1-229)||(40391222-40391450)
[»] chr7 (5 HSPs)
chr7 (33-219)||(34706753-34706939)
chr7 (67-163)||(3312555-3312649)
chr7 (93-163)||(3310869-3310937)
chr7 (1-95)||(32945329-32945423)
chr7 (58-107)||(16250396-16250445)
[»] scaffold0101 (1 HSPs)
scaffold0101 (52-158)||(564-667)
[»] chr4 (2 HSPs)
chr4 (67-141)||(25126318-25126392)
chr4 (70-110)||(44277979-44278019)
[»] chr3 (2 HSPs)
chr3 (67-179)||(32657283-32657394)
chr3 (35-76)||(15777392-15777433)
[»] scaffold0505 (1 HSPs)
scaffold0505 (82-168)||(4709-4793)
[»] chr1 (1 HSPs)
chr1 (58-179)||(18513896-18514016)
[»] scaffold0009 (1 HSPs)
scaffold0009 (42-101)||(160400-160459)
[»] chr2 (1 HSPs)
chr2 (69-109)||(29601936-29601976)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 40391450 - 40391222
Alignment:
Q  1 agagatttcaacctaaaaaaccatcaattttacaaaactagaagtaagggagagttttattcatcctaagggttgtataaacatatgagtagtgaagggt 100  Q
    |||||||||||| || ||||||||||||||  |||||||||| ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||    
T  40391450 agagatttcaacttagaaaaccatcaatttcgcaaaactagaggtaagggggagttttattcatcgtaagggttatataaacatatgagtagtgaagggt 40391351  T
Q  101 ttgtgtttttcttctttgttttcttaatcttttaatgaattgagatgttaaatttgtgctctactttgttggtgtgattatttcttaattgatgatgctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40391350 ttgtgtttttcttctttgttttcttaatcttttaatgaattgagatgttaaatttgtgctctactttgttggtgtgattatttcttaattgatgatgctg 40391251  T
Q  201 atgtgttaaatttgtggttatgttgtgtt 229  Q
    |||||||||||||||||||||||||||||    
T  40391250 atgtgttaaatttgtggttatgttgtgtt 40391222  T

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Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 33 - 219
Target Start/End: Complemental strand, 34706939 - 34706753
Alignment:
Q  33 caaaactagaagtaagggagagttttattcatcctaagggttgtataaacatatgagtagtgaagggtttgtgtttttcttctttgttttcttaatcttt 132  Q
    |||||||||| ||||||| ||| |||||| ||| ||||| ||| || || ||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  34706939 caaaactagaggtaagggggaggtttatttatcgtaaggattggatgaatatatgagtattgaagggtttatgtttttcttctttgttttcataatcttt 34706840  T
Q  133 taatgaattgagatgttaaatttgtgctctactttgttggtgtgattatttcttaattgatgatgctgatgtgttaaatttgtggtt 219  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||| | |||| |||||||||||||| ||||||    
T  34706839 taatgaattgagatgttaaatttgtgttctactttgttgctgtgattgtttctaaattcacgatgttgatgtgttaaattcgtggtt 34706753  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 3312649 - 3312555
Alignment:
Q  67 taagggttgtataaacatatgagtagtgaagggtttgtgtttttcttctttgttttcttaatcttttaatgaattgagatgttaaatttgtgctcta 163  Q
    |||||||||||| || || || |||||||||||||||||||||||||| ||||||||   |||||||||||||||   |||||| ||||||||||||    
T  3312649 taagggttgtatgaatatgtgggtagtgaagggtttgtgtttttcttccttgttttcacgatcttttaatgaatt--tatgttatatttgtgctcta 3312555  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 3310937 - 3310869
Alignment:
Q  93 tgaagggtttgtgtttttcttctttgttttcttaatcttttaatgaattgagatgttaaatttgtgctcta 163  Q
    |||||||||||||||||||||| ||||||||   |||||||||||||||   ||||||||||| |||||||    
T  3310937 tgaagggtttgtgtttttcttccttgttttcacgatcttttaatgaatt--tatgttaaatttatgctcta 3310869  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32945423 - 32945329
Alignment:
Q  1 agagatttcaacctaaaaaaccatcaattttacaaaactagaagtaa-gggagagttttattcatcctaagggttgtataaacatatgagtagtga 95  Q
    |||||||||||| ||  ||| |||||||||  |||||||||| |||| ||| ||||| |||||||| ||| |||||||| |||||||| |||||||    
T  32945423 agagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagttatattcatcataa-ggttgtatgaacatatgggtagtga 32945329  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 16250396 - 16250445
Alignment:
Q  58 tattcatcctaagggttgtataaacatatgagtagtgaagggtttgtgtt 107  Q
    |||||||| |||||||||||| ||||| || |||| ||||||||||||||    
T  16250396 tattcatcataagggttgtatgaacatgtgggtagcgaagggtttgtgtt 16250445  T

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Target: scaffold0101 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 564 - 667
Alignment:
Q  52 gagttttattcatcctaagggttgtataaacatatgagtagtgaagggtttgtgtttttcttctttgttttcttaatcttttaatgaattgagatgttaa 151  Q
    |||||||||||||| |||||||   || |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  564 gagttttattcatcgtaagggt---atgaacatatgggtagtgaagggtttgtgtttttcttcttcgttttcttaatcttttaatgaattgagatgttaa 660  T
Q  152 atttgtg 158  Q
    |||||||    
T  661 atttgtg 667  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 25126318 - 25126392
Alignment:
Q  67 taagggttgtataaacatatgagtagtgaagggtttgtgtttttcttctttgttttcttaatcttttaatgaatt 141  Q
    ||||||||||||||||||||  |||||||||| ||| |||||||||||||||||||||| |||||||||| ||||    
T  25126318 taagggttgtataaacatataggtagtgaaggatttatgtttttcttctttgttttcttgatcttttaataaatt 25126392  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 44277979 - 44278019
Alignment:
Q  70 gggttgtataaacatatgagtagtgaagggtttgtgttttt 110  Q
    ||||| ||| |||||||| ||||||||||||||||||||||    
T  44277979 gggttatatgaacatatgggtagtgaagggtttgtgttttt 44278019  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 32657283 - 32657394
Alignment:
Q  67 taagggttgtataaacatatgagtagtgaagggtttgtgttt-ttcttctttgttttcttaatcttttaatgaattgagatgttaaatttgtgctctact 165  Q
    |||||||||||| |||||||| ||||| |||  | ||||||| ||||||||||||||| | |||||||||||||||   ||||||||||||||||||| |    
T  32657283 taagggttgtatgaacatatgggtagtaaagaatctgtgtttcttcttctttgttttcatgatcttttaatgaatt--catgttaaatttgtgctctaat 32657380  T
Q  166 ttgttggtgtgatt 179  Q
    | |||| |||||||    
T  32657381 tggttgttgtgatt 32657394  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 15777392 - 15777433
Alignment:
Q  35 aaactagaagtaagggagagttttattcatcctaagggttgt 76  Q
    |||||||| ||||||| |||||||||||||| ||||||||||    
T  15777392 aaactagaggtaagggggagttttattcatcataagggttgt 15777433  T

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Target: scaffold0505 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 4793 - 4709
Alignment:
Q  82 catatgagtagtgaagggtttgtgtttttcttctttgttttcttaatcttttaatgaattgagatgttaaatttgtgctctactttg 168  Q
    |||||| |||||||||||||||||||||||||| |||||||| |  | |||| |||||||   ||||||||||||||||||| ||||    
T  4793 catatgggtagtgaagggtttgtgtttttcttccttgttttcatgtttttttgatgaatt--catgttaaatttgtgctctaatttg 4709  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 18513896 - 18514016
Alignment:
Q  58 tattcatcctaagggttgtataaacatatgagtagtgaagggtttgtgtttttcttc-tttgttttcttaatcttttaatgaattgagatgttaaatttg 156  Q
    |||||| | |||||||||||| |||||||  |||||||| ||||| || |||||||| ||||||||| | |||||||||| ||||   |||||||||||     
T  18513896 tattcaccataagggttgtatgaacatataggtagtgaaaggtttatgattttcttcttttgttttcatgatcttttaataaatt--catgttaaattta 18513993  T
Q  157 tgctctactttgttggtgtgatt 179  Q
    |||| || ||||||| |||||||    
T  18513994 tgctgtaatttgttgttgtgatt 18514016  T

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Target: scaffold0009 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 160459 - 160400
Alignment:
Q  42 aagtaagggagagttttattcatcctaagggttgtataaacatatgagtagtgaagggtt 101  Q
    ||||||||| |||||||||||||| |||||||||| ||  ||| || |||||||||||||    
T  160459 aagtaagggggagttttattcatcataagggttgtttactcatgtgggtagtgaagggtt 160400  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 29601976 - 29601936
Alignment:
Q  69 agggttgtataaacatatgagtagtgaagggtttgtgtttt 109  Q
    |||||||||| |||||||| |||||||||||||| ||||||    
T  29601976 agggttgtatgaacatatgggtagtgaagggtttttgtttt 29601936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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