View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10620_low_3 (Length: 461)
Name: NF10620_low_3
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10620_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 16 - 448
Target Start/End: Original strand, 25416958 - 25417413
Alignment:
| Q |
16 |
atttagtccctaattttactatcgaatttgggtccataactctcaaatgactaatatgtgtaaaatttgacagagtcagannnnnnnnnnn--------a |
107 |
Q |
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| T |
25416958 |
atttagtccctaattttactatcggatttgggtccacaactctcaaatgactaatatgtgtaaaatttgacagagtcggattttttttttttttttgata |
25417057 |
T |
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| Q |
108 |
tattaataacatcaggaacctgtttgagagcatcttacaaagtcaaagacgaatttggtggtttactctttaaagaattgttaaacaggttgatttcgac |
207 |
Q |
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| T |
25417058 |
tattaataacatcaggaacctgtttgagagcatcttacaaagttaaagacgaatttggtggtttactctataaagaattgttaaacaggttgatttggac |
25417157 |
T |
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| Q |
208 |
agcatttagtgaacattttcgatctaaattcaaagttgcaaaaaagacacatagcatatactacataattaaagcaaatataattataaatctaagcatc |
307 |
Q |
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| T |
25417158 |
agcatttagtgaacattttcgatctaaattcaaagttgcaaaaaagacacatagcatatactacataattaaagcaaatataattataaatctaagcatc |
25417257 |
T |
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| Q |
308 |
gaaagcaaaaattgaaaacgaagtatgcagaatctgaatgttggaagtttgatttatgcatacctttaccgatcacgaacggagcggaagcaga------ |
401 |
Q |
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| T |
25417258 |
gaaagcaaaaattgaaaacgaagtatgcagaatctgaatgttggtagtttgatttatgcatacctttaccgatgacgaacggagcggaagcagagacgga |
25417357 |
T |
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| Q |
402 |
---------gacggagtatgcggttgaggatgcagtgaggcggtctagggttcttc |
448 |
Q |
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| T |
25417358 |
gagaggagcgacggagtatgcggttgaggatgcagtgatgcggtctagggttcttc |
25417413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 11729050 - 11728997
Alignment:
| Q |
322 |
aaaacgaagtatgcagaatctgaatgttggaagtttgatttatgcataccttta |
375 |
Q |
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| T |
11729050 |
aaaacaaagaatgcagaacctgtatgttggaagtttgatttatgcataccttta |
11728997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 25411971 - 25412029
Alignment:
| Q |
305 |
atcgaaagcaaaaattgaaaacgaagtatgcagaatctgaatgttggaagtttgattta |
363 |
Q |
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| T |
25411971 |
atcgaacggaaaaattgaaaacaaagtatgtagaatctgtatcttggaagtttgattta |
25412029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Original strand, 11730434 - 11730494
Alignment:
| Q |
314 |
aaaaattgaaaacgaagtatgcagaatctgaatgttggaagtttgatttatgcataccttta |
375 |
Q |
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| T |
11730434 |
aaaaattgaaaataaagaatgcagaatttta-tgttggaagtttgatatatgcataccttta |
11730494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Complemental strand, 9710081 - 9710037
Alignment:
| Q |
131 |
ttgagagcatcttacaaagtcaaagacgaatttggtggtttactc |
175 |
Q |
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| T |
9710081 |
ttgagagcgtcttacaaagtcagagactaatttggtggtttactc |
9710037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 52774738 - 52774688
Alignment:
| Q |
125 |
acctgtttgagagcatcttacaaagtcaaagacgaatttggtggtttactc |
175 |
Q |
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| T |
52774738 |
acctatttgagagcaccctacaaagtcatagacaaatttggtggtttactc |
52774688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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