View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10620_low_5 (Length: 445)
Name: NF10620_low_5
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10620_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 14207174 - 14207487
Alignment:
| Q |
14 |
actttgcttcctccaacttcttgtgggtggtttgatttcaagttccctattgtgtgttgtgttatactcctaaaataaagtatcatatcatgattgtatt |
113 |
Q |
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| T |
14207174 |
actttgcttcctccaacttcttgtaggtggtttgatttctagttccctattgtgtgttgtgttatactcctaaaataaag---cagatcatgattgtatt |
14207270 |
T |
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| Q |
114 |
ttgttgattccataatgtatagtatgtcaaacaacaccagaa-----agnnnnnnnn-ctaacctgtatgcttgagtctgtgcaaccaatatataacttt |
207 |
Q |
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| T |
14207271 |
ttgttgattccataatgtat-----gtcaaacaacaccagaagaaaaagaaaaaaaaactaacctgtatgcttgagtctgtgcagccaatatataacttt |
14207365 |
T |
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| Q |
208 |
ccatgatccactgccatgcacttcccatgcttacctttgaaaatatctcttatctctcttgatttgttaacaagctg-aaaaaagtaaacaataaaaagt |
306 |
Q |
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| T |
14207366 |
ccatgatccactgccatgcattttccatgcttacctttgaaaatatcccttatctctcttgatttgttaacaagctgaaaaaaagtaaacaagacaaact |
14207465 |
T |
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| Q |
307 |
catcagttgttataattgtccc |
328 |
Q |
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| T |
14207466 |
catcagttgttataattgtccc |
14207487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 14207556 - 14207612
Alignment:
| Q |
374 |
tatctaagattcgttgaaccatccgctatcaggccactcaggtcacgctctagatgt |
430 |
Q |
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| T |
14207556 |
tatctaagattcgttgaaccatccgctatcaggccactcaggtctcattctagatgt |
14207612 |
T |
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