View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10620_low_6 (Length: 386)

Name: NF10620_low_6
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10620_low_6
NF10620_low_6
[»] chr6 (15 HSPs)
chr6 (19-357)||(27100546-27100884)
chr6 (168-239)||(33187259-33187330)
chr6 (48-148)||(8161417-8161517)
chr6 (197-276)||(6699687-6699766)
chr6 (24-75)||(29920451-29920502)
chr6 (110-146)||(21926727-21926763)
chr6 (159-274)||(9307229-9307344)
chr6 (60-143)||(33187090-33187173)
chr6 (41-99)||(34937841-34937899)
chr6 (60-117)||(9307298-9307355)
chr6 (49-114)||(9436537-9436602)
chr6 (168-217)||(10349765-10349814)
chr6 (56-148)||(515942-516034)
chr6 (59-119)||(10219604-10219664)
chr6 (169-217)||(23140465-23140513)
[»] chr7 (11 HSPs)
chr7 (33-147)||(23474548-23474662)
chr7 (60-148)||(46719967-46720055)
chr7 (162-235)||(23457810-23457883)
chr7 (60-100)||(23441521-23441561)
chr7 (60-147)||(23457766-23457853)
chr7 (225-276)||(30601295-30601346)
chr7 (49-148)||(32996452-32996551)
chr7 (59-144)||(14669300-14669385)
chr7 (162-235)||(23441491-23441564)
chr7 (165-213)||(19228803-19228851)
chr7 (60-100)||(23532913-23532953)
[»] chr3 (10 HSPs)
chr3 (38-148)||(48047834-48047944)
chr3 (48-117)||(30843785-30843854)
chr3 (24-115)||(14984438-14984529)
chr3 (52-115)||(38989874-38989937)
chr3 (197-276)||(46848400-46848479)
chr3 (60-99)||(47944548-47944587)
chr3 (159-217)||(43838815-43838873)
chr3 (60-101)||(21433558-21433599)
chr3 (165-214)||(22319063-22319112)
chr3 (19-75)||(34105305-34105361)
[»] scaffold0086 (1 HSPs)
scaffold0086 (19-117)||(21838-21936)
[»] chr1 (8 HSPs)
chr1 (64-157)||(35607217-35607310)
chr1 (26-144)||(6727950-6728068)
chr1 (168-272)||(30050595-30050699)
chr1 (26-97)||(12436944-12437015)
chr1 (26-99)||(8778986-8779059)
chr1 (229-274)||(49880047-49880092)
chr1 (60-148)||(8987233-8987321)
chr1 (26-94)||(38445173-38445241)
[»] chr4 (14 HSPs)
chr4 (92-144)||(20177617-20177669)
chr4 (24-99)||(17381549-17381624)
chr4 (24-144)||(28286235-28286349)
chr4 (168-239)||(8170732-8170804)
chr4 (48-148)||(31903435-31903535)
chr4 (50-114)||(35075822-35075886)
chr4 (28-144)||(51226061-51226177)
chr4 (19-114)||(11840018-11840113)
chr4 (24-147)||(42375184-42375307)
chr4 (198-271)||(12922168-12922241)
chr4 (46-119)||(31903305-31903378)
chr4 (168-276)||(4161619-4161727)
chr4 (60-116)||(5979401-5979457)
chr4 (168-276)||(13834324-13834432)
[»] chr8 (4 HSPs)
chr8 (26-148)||(21601941-21602063)
chr8 (40-117)||(4493193-4493270)
chr8 (59-148)||(14523893-14523982)
chr8 (168-281)||(21600639-21600751)
[»] chr5 (5 HSPs)
chr5 (90-143)||(14121990-14122043)
chr5 (60-118)||(8206095-8206153)
chr5 (168-226)||(14468816-14468874)
chr5 (168-217)||(35293811-35293860)
chr5 (107-147)||(35079025-35079065)
[»] scaffold0114 (1 HSPs)
scaffold0114 (229-275)||(34907-34953)
[»] scaffold0050 (1 HSPs)
scaffold0050 (59-99)||(81362-81402)
[»] chr2 (1 HSPs)
chr2 (24-96)||(18903171-18903243)


Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 27100546 - 27100884
Alignment:
Q  19 taagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataatt 118  Q
    |||||||| ||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27100546 taagcagtggtcacaataattcttcattgtatcaaatctccaaaatagttcttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataatt 27100645  T
Q  119 cttcaatgttgatattaactcttttcatatgacgattgaagtcaaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgatat 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  27100646 cttcaatgttgacattaactcttttcatatgacgattgaagtcaaaaattattttgattaacaaaatgcataataaaggactattttgaaattttgatat 27100745  T
Q  219 actgatgaactattatgactattaattataaatttagggaccaaaataactattacccaaaaatatttagaaagaatgtgtttgaaagcctacaaaagtt 318  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27100746 actgatgaactattatgactactgattacaaatttagggaccaaaatgactattacccaaaaatatttagaaagaatgtgtttaaaagcctacaaaagtt 27100845  T
Q  319 agttttacaaaacacagttcaaagtatttctttcatatg 357  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  27100846 agttttacaaaacactgttcaaaatatttctttcatatg 27100884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 33187259 - 33187330
Alignment:
Q  168 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgacta 239  Q
    ||||||||||||| |||| |||||| |  ||||||||||||||||||||| | | |||||||||||||||||    
T  33187259 tattttgattaacgaaattcataatcagagactattttgaaatttcgatacatttatgaactattatgacta 33187330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 8161517 - 8161417
Alignment:
Q  48 tatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcata 147  Q
    ||||||| ||| |||||| ||||| |||||    || |||| |||||||||||  ||||||||||||| || |||  |||||||||||||||||||||||    
T  8161517 tatcaaaattcaaaaatatttttttattgtatattttgttagtcaaaatagtttttgacgttaaaatagtttttcgttgttgatattaactcttttcata 8161418  T
Q  148 t 148  Q
    |    
T  8161417 t 8161417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 6699687 - 6699766
Alignment:
Q  197 gactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataactattaccc 276  Q
    ||||||||||||| || |||||| ||| | ||||||||| ||| |  ||||| |||||||||||||||| ||||||||||    
T  6699687 gactattttgaaaatttgatatattgagggactattatgcctacttgttatacatttagggaccaaaatgactattaccc 6699766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 29920451 - 29920502
Alignment:
Q  24 agtagtcacaataatccttcattatatcaaatttccaaaatagtttttgatt 75  Q
    ||||||||||||||||||||| | ||||||| || |||||||||||||||||    
T  29920451 agtagtcacaataatccttcaatgtatcaaaatttcaaaatagtttttgatt 29920502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 21926763 - 21926727
Alignment:
Q  110 aaaataattcttcaatgttgatattaactcttttcat 146  Q
    ||||||||||||||||||||| |||||||||||||||    
T  21926763 aaaataattcttcaatgttgacattaactcttttcat 21926727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 9307344 - 9307229
Alignment:
Q  159 gtcaaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttaggga 258  Q
    ||||| |||||||||||||||| || |||||||||||  |||||||| |||||| |||| | | |   |||||||| |||||| |||| | ||| || ||    
T  9307344 gtcaagaattattttgattaacgaagtgcataataaaaaactattttaaaattttgatacatttagagactattatcactatttattacacattcagaga 9307245  T
Q  259 ccaaaataactattac 274  Q
     ||||||||| |||||    
T  9307244 tcaaaataaccattac 9307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 33187090 - 33187173
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactctttt 143  Q
    |||||||||||||  |||||  |||| || ||||||||||   ||||||||||||| |||||||||||||| | ||||| ||||    
T  33187090 aaaatagtttttggatgtgcagttcgatagtcaaaatagtcattgacgttaaaatagttcttcaatgttgacaataactttttt 33187173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 34937841 - 34937899
Alignment:
Q  41 ttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagt 99  Q
    |||||| ||||||| || ||||||| ||||||||||||  ||| |||||||||||||||    
T  34937841 ttcattgtatcaaaatttcaaaataatttttgattgtgtactttgttaatcaaaatagt 34937899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 9307298 - 9307355
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataat 117  Q
    |||||||||||| ||| ||| ||||||||||||||||| ||| |||||  ||||||||    
T  9307298 aaaatagttttttattatgcacttcgttaatcaaaataattcttgacgcaaaaataat 9307355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 9436537 - 9436602
Alignment:
Q  49 atcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaat 114  Q
    |||||| || |||||||||| || ||||||| |||||||| ||||||| |||  ||||||||||||    
T  9436537 atcaaaattacaaaatagttcttaattgtgcacttcgttagtcaaaattgtttctgacgttaaaat 9436602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 10349814 - 10349765
Alignment:
Q  168 tattttgattaacaaaatgcataataaatgactattttgaaatttcgata 217  Q
    ||||||||||||| || |||| ||| || |||||||||||||||||||||    
T  10349814 tattttgattaacgaagtgcacaatgaaggactattttgaaatttcgata 10349765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 516034 - 515942
Alignment:
Q  56 ttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 148  Q
    ||||||||||||   ||||||||| |||||||| ||||||||||   ||| ||||| ||  | | ||||| |||| |||||||||||||||||    
T  516034 ttccaaaatagtcaatgattgtgcacttcgttagtcaaaatagtctctgatgttaagatggtccctcaatattgacattaactcttttcatat 515942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 10219604 - 10219664
Alignment:
Q  59 caaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattc 119  Q
    ||||||||||  ||||||||| ||| |||| ||||||||||   |||||||||||||||||    
T  10219604 caaaatagttcctgattgtgcactttgttagtcaaaatagtctctgacgttaaaataattc 10219664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 23140513 - 23140465
Alignment:
Q  169 attttgattaacaaaatgcataataaatgactattttgaaatttcgata 217  Q
    ||||||| |||||||||||| ||| |  |||||||||||||||||||||    
T  23140513 attttgactaacaaaatgcaaaattagagactattttgaaatttcgata 23140465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 147
Target Start/End: Original strand, 23474548 - 23474662
Alignment:
Q  33 aataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgata 132  Q
    |||| ||||||| | ||||||| ||  ||||||||| |||||||||| ||||||||||||||||||||  | | |||||||||||   |||||| ||| |    
T  23474548 aatagtccttcaatgtatcaaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagttttttatgttaaaataatctctcaatggtgaca 23474647  T
Q  133 ttaactcttttcata 147  Q
    |||||||||||||||    
T  23474648 ttaactcttttcata 23474662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 46720055 - 46719967
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 148  Q
    ||||| || ||||||||||| ||| |||| |||||||||||  ||||||||||||| | |||| || || |||||||||||||| ||||    
T  46720055 aaaatggtatttgattgtgcactttgttagtcaaaatagtttttgacgttaaaatagtccttcgatatttatattaactctttttatat 46719967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 23457810 - 23457883
Alignment:
Q  162 aaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatg 235  Q
    ||||| |||||||||||||||| |||| ||| ||| |||||||| ||||||||||| | ||| | |||||||||    
T  23457810 aaaaactattttgattaacaaagtgcacaatcaataactattttaaaatttcgatacattgaaggactattatg 23457883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 23441521 - 23441561
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagtt 100  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  23441521 aaaatagttattgattgtgcacttcgttaatcaaaatagtt 23441561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 23457853 - 23457766
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcata 147  Q
    ||||||||| |||||||||| ||| ||||||||||||||||  |   ||||||||| |   |||||| ||| ||||||||||||||||    
T  23457853 aaaatagttattgattgtgcactttgttaatcaaaatagttttttgtgttaaaatagtctctcaatggtgacattaactcttttcata 23457766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 30601346 - 30601295
Alignment:
Q  225 gaactattatgactattaattataaatttagggaccaaaataactattaccc 276  Q
    ||||||||||||||| | |||| | |||||||||||||| ||||||||||||    
T  30601346 gaactattatgactaatcattacacatttagggaccaaagtaactattaccc 30601295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 32996551 - 32996452
Alignment:
Q  49 atcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 148  Q
    |||||| ||| |||||||| | ||||||||| ||| |||||||||||||||  | |||| ||||||||| |  |||| || | | |||||||||||||||    
T  32996551 atcaaaattctaaaatagtctctgattgtgcactttgttaatcaaaatagtctacgacgctaaaataatcccccaatattcacactaactcttttcatat 32996452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 14669300 - 14669385
Alignment:
Q  59 caaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttc 144  Q
    ||||||||| | ||||||||| ||  |||| |||||||||| | ||||||||||| ||| |||| ||||||| | | |||||||||    
T  14669300 caaaatagtctctgattgtgcactatgttagtcaaaatagtccttgacgttaaaacaatccttctatgttgacactgactcttttc 14669385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 23441564 - 23441491
Alignment:
Q  162 aaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatg 235  Q
    ||||| ||||||||||||| || |||| ||| ||| |||||||| ||||||||||| | ||| | |||||||||    
T  23441564 aaaaactattttgattaacgaagtgcacaatcaataactattttaaaatttcgatacattgaaggactattatg 23441491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 19228851 - 19228803
Alignment:
Q  165 aattattttgattaacaaaatgcataataaatgactattttgaaatttc 213  Q
    ||||||||||||||||||| |||||||| ||| |||| |||| ||||||    
T  19228851 aattattttgattaacaaactgcataatcaataactactttgcaatttc 19228803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 23532913 - 23532953
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagtt 100  Q
    ||||||||| |||||||||  ||||||||||||||||||||    
T  23532913 aaaatagttattgattgtggacttcgttaatcaaaatagtt 23532953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 48047834 - 48047944
Alignment:
Q  38 tccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaac 137  Q
    ||||||| | || |||| |||||||||| | | ||||| ||| |||| |||||||||||||| ||||||||||||||| | | |||||||||| | ||||    
T  48047834 tccttcaatgtaacaaacttccaaaataatatctgattatgcgcttcattaatcaaaatagtccatgacgttaaaatagtccctcaatgttgacaataac 48047933  T
Q  138 tcttttcatat 148  Q
    |||||||||||    
T  48047934 tcttttcatat 48047944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 30843854 - 30843785
Alignment:
Q  48 tatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataat 117  Q
    ||||||| |||||||||||| | ||||||||| ||| ||||||||||||||| | ||||| |||||||||    
T  30843854 tatcaaaattccaaaatagtctctgattgtgcactttgttaatcaaaatagtccctgacgctaaaataat 30843785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 14984438 - 14984529
Alignment:
Q  24 agtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaata 115  Q
    ||||||||||||| ||| ||| |||||| || || ||||||| |   ||||||||| |||||||| |||||||||||| |||| ||||||||    
T  14984438 agtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttagtcaaaatagttcctgacattaaaata 14984529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 38989937 - 38989874
Alignment:
Q  52 aaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaata 115  Q
    |||||| ||||||| ||||||||||||| |||||||  ||||||||||   |||||||||||||    
T  38989937 aaattttcaaaatattttttgattgtgcacttcgttggtcaaaatagtctctgacgttaaaata 38989874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 46848400 - 46848479
Alignment:
Q  197 gactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataactattaccc 276  Q
    |||||||||||||||| |||| | ||| |||||||| |||||| | |||| | ||| |||||||||| | ||||||||||    
T  46848400 gactattttgaaattttgatacattgaggaactattttgactactcattacacattcagggaccaaagtgactattaccc 46848479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 47944587 - 47944548
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagt 99  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  47944587 aaaatagtctttgattgtgcacttcgttaatcaaaatagt 47944548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 43838815 - 43838873
Alignment:
Q  159 gtcaaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgata 217  Q
    |||||| | |||||||| |||||||||||| ||| |||||||||||| |||||| ||||    
T  43838815 gtcaaagactattttgactaacaaaatgcacaatcaatgactattttaaaattttgata 43838873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 21433558 - 21433599
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagttc 101  Q
    ||||||||| |||||||||| ||| |||||||||||||||||    
T  21433558 aaaatagttattgattgtgcactttgttaatcaaaatagttc 21433599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 22319112 - 22319063
Alignment:
Q  165 aattattttgattaacaaaatgcataataaatgactattttgaaatttcg 214  Q
    ||||||||| | ||||||| |||||||| ||||||||||||| |||||||    
T  22319112 aattatttttactaacaaagtgcataatcaatgactattttgtaatttcg 22319063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 34105305 - 34105361
Alignment:
Q  19 taagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgatt 75  Q
    |||| |||||||| ||||||| |||| | ||||||| || |||||||||||||||||    
T  34105305 taagaagtagtcataataatcgttcagtgtatcaaaatttcaaaatagtttttgatt 34105361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 21936 - 21838
Alignment:
Q  19 taagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataat 117  Q
    |||| ||||||||||||| || |||| ||||||||| ||| |||||| ||| ||||||||| ||| |||| | |||||||||||||||  |||||||||    
T  21936 taagaagtagtcacaatagtctttcaatatatcaaaattcaaaaatattttctgattgtgcactttgttagtaaaaatagttcatgacactaaaataat 21838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 35607217 - 35607310
Alignment:
Q  64 tagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatatgacgattga 157  Q
    ||||||||||||||||  ||||||| |||||||| |  |||||||||||||||| ||||||| |||| | |||| |||||||||| | ||||||    
T  35607217 tagtttttgattgtgcatttcgttagtcaaaataatctatgacgttaaaataatccttcaatattgacaataacacttttcatataaagattga 35607310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 6728068 - 6727950
Alignment:
Q  26 tagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaat 125  Q
    ||||||||||| ||||||| |  |||||| |||||||||||| ||  ||||||| ||  |||| ||||||||||   |||| |||||||| | |||||||    
T  6728068 tagtcacaatagtccttcaatgaatcaaaattccaaaatagtcttccattgtgcactatgttagtcaaaatagtctttgactttaaaatagtgcttcaat 6727969  T
Q  126 gttgatattaactcttttc 144  Q
    ||||| | |||||||||||    
T  6727968 gttgacactaactcttttc 6727950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 272
Target Start/End: Original strand, 30050595 - 30050699
Alignment:
Q  168 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataa 267  Q
    |||||||| ||||||| |||||||| |  ||||||||||||||||||||| | | | | |||||| || ||| | |||| ||||| |  |||||||||||    
T  30050595 tattttgactaacaaattgcataatcatagactattttgaaatttcgatacattaagggactattttggctaatcattacaaattcaaagaccaaaataa 30050694  T
Q  268 ctatt 272  Q
    |||||    
T  30050695 ctatt 30050699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 12437015 - 12436944
Alignment:
Q  26 tagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaata 97  Q
    |||| ||||||||| || ||||||||||| || |||||||||| ||||||||||  | | ||||||||||||    
T  12437015 tagttacaataatctttgattatatcaaaatttcaaaatagttattgattgtgcattccattaatcaaaata 12436944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 8778986 - 8779059
Alignment:
Q  26 tagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagt 99  Q
    ||||||| ||| ||| ||| ||||||||| || ||||||||||| ||||||||| ||| |||| | ||||||||    
T  8778986 tagtcacgatagtccctcaatatatcaaaatttcaaaatagtttctgattgtgcactttgttagttaaaatagt 8779059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 49880092 - 49880047
Alignment:
Q  229 tattatgactattaattataaatttagggaccaaaataactattac 274  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||    
T  49880092 tattatgactatttattacatattcagggaccaaaataactattac 49880047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 8987233 - 8987321
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 148  Q
    |||||||| ||| ||| ||| |||||||||||  ||||||   | || |||||||| ||||||||||  || |||||||||||||||||    
T  8987233 aaaatagtatttaattatgcacttcgttaatctgaatagtctcttacattaaaatagttcttcaatgccgacattaactcttttcatat 8987321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 38445241 - 38445173
Alignment:
Q  26 tagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaa 94  Q
    ||||||||||| ||||| | | |||| || ||| |||||||| ||||||||||| |||| |||||||||    
T  38445241 tagtcacaatagtcctttaatgtatcgaaattctaaaatagtctttgattgtgcacttccttaatcaaa 38445173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 20177669 - 20177617
Alignment:
Q  92 aaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttc 144  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  20177669 aaaatagattatgacgttaaaataattcttcaaagttgatattaactcttttc 20177617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 17381624 - 17381549
Alignment:
Q  24 agtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagt 99  Q
    ||||||||||||| ||| ||| | ||||||| ||||||||||||   ||||||||| ||| |||||||||||||||    
T  17381624 agtagtcacaatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaaatagt 17381549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 144
Target Start/End: Original strand, 28286235 - 28286349
Alignment:
Q  24 agtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttca 123  Q
    ||||||||||||| | ||||| |  | |||| |||||||||||| | ||||| ||| |||| ||| ||||| ||||      ||||||||||||||||||    
T  28286235 agtagtcacaatagttcttcagtgaaacaaaattccaaaatagtctctgattatgcacttcattagtcaaagtagt------cgttaaaataattcttca 28286328  T
Q  124 atgttgatattaactcttttc 144  Q
    ||||||| | |||||||||||    
T  28286329 atgttgacaataactcttttc 28286349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 8170804 - 8170732
Alignment:
Q  168 tattttgattaacaaaatgcataataaatgactattttgaaa-tttcgatatactgatgaactattatgacta 239  Q
    |||||||| ||||||| |||| ||| || ||||||||||||| ||| |||||| ||||| |||||||||||||    
T  8170804 tattttgactaacaaagtgcacaatcaaagactattttgaaatttttgatatattgatggactattatgacta 8170732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 31903535 - 31903435
Alignment:
Q  48 tatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcata 147  Q
    ||||||| |||||||||||| | |||| |||| ||| ||||||||||||||| |||||||   ||||||| | |||||  | | | ||||||||||||||    
T  31903535 tatcaaaattccaaaatagtctctgatcgtgcactttgttaatcaaaatagtccatgacgcataaataatccctcaatactcacaataactcttttcata 31903436  T
Q  148 t 148  Q
    |    
T  31903435 t 31903435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 35075886 - 35075822
Alignment:
Q  50 tcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaat 114  Q
    ||||| || ||||||| || |||||||||| |||||||| ||||| ||||||||||| |||||||    
T  35075886 tcaaaattacaaaataattcttgattgtgcacttcgttagtcaaactagttcatgacattaaaat 35075822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 144
Target Start/End: Complemental strand, 51226177 - 51226061
Alignment:
Q  28 gtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgt 127  Q
    ||||||||| || |||| | |||| || ||| ||||| ||| |||||||||| ||  |||| |||||||||||  ||| ||||||||| ||| |||||||    
T  51226177 gtcacaatagtctttcaatgtatcgaaattctaaaattgttcttgattgtgcactctgttagtcaaaatagttattgaagttaaaatagttcctcaatgt 51226078  T
Q  128 tgatattaactcttttc 144  Q
    | | | |||||||||||    
T  51226077 ttacaataactcttttc 51226061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 11840113 - 11840018
Alignment:
Q  19 taagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaat 114  Q
    |||| ||||||| |||||  || ||| | ||||||| || |||||||||   ||||||||| ||| ||||||||||||||| | ||||||||||||    
T  11840113 taaggagtagtcgcaataggccctcaatgtatcaaaatttcaaaatagtccctgattgtgcactttgttaatcaaaatagtccctgacgttaaaat 11840018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 42375307 - 42375184
Alignment:
Q  24 agtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttca 123  Q
    ||||| ||||||||| ||| | | |||| || || |||| |||||||||||| ||| |||||||| | ||||||||   |||| |||||||| |   |||    
T  42375307 agtagccacaataattctttaatgtatcgaaatttcaaagtagtttttgattctgcacttcgttagttaaaatagtctctgacattaaaatagtctctca 42375208  T
Q  124 atgttgatattaactcttttcata 147  Q
    ||| |||||||||||| |||||||    
T  42375207 atgctgatattaactcatttcata 42375184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 12922241 - 12922168
Alignment:
Q  198 actattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataactat 271  Q
    |||||||||||||||||||| | |||   |||||| |||||| | |||| | ||| ||||||||||||||||||    
T  12922241 actattttgaaatttcgatacattgaaatactattgtgactacttattacacattcagggaccaaaataactat 12922168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 31903305 - 31903378
Alignment:
Q  46 tatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattc 119  Q
    ||||||||| || |||||||||   |||||||||| |||  || ||||||| || |||||||||||||||||||    
T  31903305 tatatcaaaatttcaaaatagtccctgattgtgcttttcagtagtcaaaattgtccatgacgttaaaataattc 31903378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 4161727 - 4161619
Alignment:
Q  168 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataa 267  Q
    ||||||||  |||| |||| ||||| || |||||||||||||||| |||| | ||| | |||||| |||||| | |||| | |||| ||||| ||| | |    
T  4161727 tattttgaccaacagaatgtataatcaaggactattttgaaattttgatacattgaaggactattgtgactactcattacacatttggggacgaaagtga 4161628  T
Q  268 ctattaccc 276  Q
    |||||||||    
T  4161627 ctattaccc 4161619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 5979401 - 5979457
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataa 116  Q
    |||||||| | ||||||||| |||||||| ||||||||||   ||||||||||||||    
T  5979401 aaaatagtatatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaataa 5979457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 276
Target Start/End: Complemental strand, 13834432 - 13834324
Alignment:
Q  168 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataa 267  Q
    |||||||| ||||||| |||| ||| || ||||||||| |||||| |||| | ||| | |||||||||  || |  ||| | ||| ||||||||||||||    
T  13834432 tattttgactaacaaagtgcacaatcaaggactattttaaaattttgataaattgagggactattatggttactccttacacattcagggaccaaaataa 13834333  T
Q  268 ctattaccc 276  Q
     ||||||||    
T  13834332 ttattaccc 13834324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 21601941 - 21602063
Alignment:
Q  26 tagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaat 125  Q
    ||||||||||| ||| ||| | ||||||| |||||||||||| | ||||||||| | | |||| ||||| |||| | ||||  ||||||||| | |||||    
T  21601941 tagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctgattgtgcacgttgttagtcaaagtagtccctgacactaaaataatccctcaat 21602040  T
Q  126 gttgatattaactcttttcatat 148  Q
     || ||| |||||||||||||||    
T  21602041 attcataataactcttttcatat 21602063  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 4493270 - 4493193
Alignment:
Q  40 cttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataat 117  Q
    ||||||| ||||||| ||| |||||| || ||||| |||||||| |||| ||||||||||| || |||||||||||||    
T  4493270 cttcattgtatcaaaattctaaaataattcttgatagtgctctttgttagtcaaaatagtttataacgttaaaataat 4493193  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 14523982 - 14523893
Alignment:
Q  59 caaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 148  Q
    |||||||||| |||||||| | |||||||| ||| ||||||   || ||| |||||||| |||||||  |||| ||||||||||||||||    
T  14523982 caaaatagttcttgattgttcacttcgttagtcataatagtctctggcgtcaaaataatccttcaatactgatgttaactcttttcatat 14523893  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 281
Target Start/End: Original strand, 21600639 - 21600751
Alignment:
Q  168 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataa 267  Q
    |||||||| | ||| |||||| ||| || |||||||||||| ||| |||| | ||||| ||||||||||||| | |||| | ||| || ||||||| | |    
T  21600639 tattttgacttacagaatgcacaatcaaagactattttgaatttt-gatacattgatggactattatgactaatcattacacattcagagaccaaattga 21600737  T
Q  268 ctattacccaaaaa 281  Q
    |||||||| |||||    
T  21600738 ctattaccgaaaaa 21600751  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 14122043 - 14121990
Alignment:
Q  90 tcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactctttt 143  Q
    |||||||| |||| |||||||||||| |||||||||||||||| ||||||||||    
T  14122043 tcaaaataattcacgacgttaaaatagttcttcaatgttgataataactctttt 14121990  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 8206095 - 8206153
Alignment:
Q  60 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataatt 118  Q
    |||||||| ||||||||||| | | |||||||||||||||   ||||||||||||||||    
T  8206095 aaaatagtctttgattgtgcacattgttaatcaaaatagtctctgacgttaaaataatt 8206153  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 14468874 - 14468816
Alignment:
Q  168 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatga 226  Q
    |||||||||||||| | |||| ||| || ||||||||||||||||||||| | ||||||    
T  14468874 tattttgattaacatagtgcacaattaaggactattttgaaatttcgatacattgatga 14468816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 35293811 - 35293860
Alignment:
Q  168 tattttgattaacaaaatgcataataaatgactattttgaaatttcgata 217  Q
    |||||||| ||||| |||||||| | | ||||||||||||||||||||||    
T  35293811 tattttgactaacacaatgcatactcagtgactattttgaaatttcgata 35293860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 35079065 - 35079025
Alignment:
Q  107 gttaaaataattcttcaatgttgatattaactcttttcata 147  Q
    ||||||||||||  ||||| |||||||||||||||||||||    
T  35079065 gttaaaataatttatcaattttgatattaactcttttcata 35079025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 34953 - 34907
Alignment:
Q  229 tattatgactattaattataaatttagggaccaaaataactattacc 275  Q
    ||||||||||||| |||| | ||| ||||||||||||||||||||||    
T  34953 tattatgactatttattacatattcagggaccaaaataactattacc 34907  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 81362 - 81402
Alignment:
Q  59 caaaatagtttttgattgtgctcttcgttaatcaaaatagt 99  Q
    ||||||||||| ||||||||| |||||||| ||||||||||    
T  81362 caaaatagtttatgattgtgcacttcgttagtcaaaatagt 81402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 18903243 - 18903171
Alignment:
Q  24 agtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaat 96  Q
    ||||||||||||| || |||| | |||| || ||| |||||||||| ||||||||| ||  ||||||||||||    
T  18903243 agtagtcacaatagtcattcaatgtatcgaaattctaaaatagtttctgattgtgcactatgttaatcaaaat 18903171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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