View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10620_low_9 (Length: 329)
Name: NF10620_low_9
Description: NF10620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10620_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 102 - 300
Target Start/End: Original strand, 3969624 - 3969822
Alignment:
| Q |
102 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaaaag |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3969624 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaagag |
3969723 |
T |
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| Q |
202 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgactgagatggtggaaagagagagaaaagaaatgtataacctactga |
300 |
Q |
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| T |
3969724 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgacagagatggtggaaagagagagaaaagaaatgtataacctactga |
3969822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 102 - 300
Target Start/End: Complemental strand, 24124874 - 24124677
Alignment:
| Q |
102 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaaaag |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24124874 |
tgagtatcttgtccggatcaagttattctagatcaatca-tagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaagag |
24124776 |
T |
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| Q |
202 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgactgagatggtggaaagagagagaaaagaaatgtataacctactga |
300 |
Q |
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| T |
24124775 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgacagagatggtggaaagagagagaaaagaaatgtataatctactga |
24124677 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 102 - 300
Target Start/End: Complemental strand, 36620731 - 36620533
Alignment:
| Q |
102 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaaaag |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36620731 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaagag |
36620632 |
T |
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| Q |
202 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgactgagatggtggaaagagagagaaaagaaatgtataacctactga |
300 |
Q |
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| T |
36620631 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgacagagatggtggaaagagagagaaaagaaatgtataacctactga |
36620533 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 102 - 300
Target Start/End: Complemental strand, 23354639 - 23354441
Alignment:
| Q |
102 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaaaag |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23354639 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaagag |
23354540 |
T |
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| Q |
202 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgactgagatggtggaaagagagagaaaagaaatgtataacctactga |
300 |
Q |
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| T |
23354539 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgacagagatggtggaaagagagagaaaagaaatgtataacctactga |
23354441 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 102 - 300
Target Start/End: Original strand, 9805405 - 9805603
Alignment:
| Q |
102 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaaaag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
9805405 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtctttatctgtgatgggaagagagggaatgtaaagag |
9805504 |
T |
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| Q |
202 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgactgagatggtggaaagagagagaaaagaaatgtataacctactga |
300 |
Q |
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| T |
9805505 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaagcatggaaagatgacagagatggtggaaagagagagaaaagaaatgtataacctactga |
9805603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 102 - 241
Target Start/End: Complemental strand, 36121576 - 36121443
Alignment:
| Q |
102 |
tgagtatcttgtccggatcaagttattctagatcaatcaatagtcatggataatatgatcaagtatttatctgtgatgggaagagagggaatgtaaaaag |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| | | |||||| |||| ||||| |||||||| ||||||||||||| || |
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| T |
36121576 |
tgagtatcttgtccggatcaagttattctagatcaattcatagtcatgtacattatgat-aagtctttat-----atgggaagggagggaatgtaaagag |
36121483 |
T |
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| Q |
202 |
gatttggttatggtgtagaaggaagaaaggaacgggtaaa |
241 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
36121482 |
gatttggttatggagtagaaggaagaaaggaacgggtaaa |
36121443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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