View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_high_13 (Length: 229)
Name: NF10621_high_13
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 26 - 205
Target Start/End: Original strand, 50725159 - 50725338
Alignment:
| Q |
26 |
aaggaaactagattgacttaagtgttgacaaaaaatatccttattcccatctttcccagatcttcatcttgttcttcttcattctccttgttattgttta |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50725159 |
aaggaaactagattgacttaagtgttgacaaaaaatatccttattcccatctttcccagatcttcatcttgttcttcttcattctccttgttattgttta |
50725258 |
T |
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| Q |
126 |
tcttaacatttacttgctgattctttgtgtaacaatgttgatttagaattcaaagatacataaacgtgttataccatact |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50725259 |
tcttaacatttacttgctgattctttgtgtaacaatgttgatttagaattcaaagacacataaacgtgttataccatact |
50725338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 50787687 - 50787512
Alignment:
| Q |
30 |
aaactagattgacttaagtgttgacaaaaaatatccttattcccatctttcccagatcttcatcttgttcttcttcattctccttgttattgtttatctt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50787687 |
aaactagattgacttaagtgttgacaaaaaatatccttattcccatctttcccagatcttcatcttgttcttcttcattctccttgttattgtttatctt |
50787588 |
T |
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| Q |
130 |
aacatttacttgctgattctttgtgtaacaatgttgatttagaattcaaagatacataaacgtgttataccatact |
205 |
Q |
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| T |
50787587 |
aacatttacttgctgattctttgtgtaacaatgttgatttagaattcaaagacacataaacgtgttataccatact |
50787512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 21347852 - 21347672
Alignment:
| Q |
26 |
aaggaaactagattgacttaagtgttgacaaaaaa-tatccttattcccatctttcccagatcttcatcttgttcttcttcattctccttgttattgttt |
124 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21347852 |
aaggaaactagattgactttagtgttgacaaaaaaatatccttattcccatatttcccagatcttcatcttgttcttcttcattctccttattattgttt |
21347753 |
T |
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| Q |
125 |
atcttaacatttacttgctgattctttgtgtaacaatgttgatttagaattcaaagatacataaacgtgttataccatact |
205 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
21347752 |
atcttaacatttccttgttgattctttgtgtaacaatgttgatttagaattcaaagacacataaacatgttataccatact |
21347672 |
T |
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