View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_high_2 (Length: 356)
Name: NF10621_high_2
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 310
Target Start/End: Original strand, 41704006 - 41704314
Alignment:
| Q |
2 |
cacctcttgtaatgtcattcttttttattgggtaccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatattgttaga |
101 |
Q |
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| T |
41704006 |
cacctcttgtaatgtcattcttttttattgagtaccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatattgttaaa |
41704105 |
T |
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| Q |
102 |
gtttgttaa-aagtagttactaattggttacaaattagttcatgtttgttagtttagctagttaagatcaatatataatgtgaacaacaaaaaattaaat |
200 |
Q |
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| T |
41704106 |
agtagttactaattggttacta-ttagttacaaattagttcatgtttgttagtttagctagttaagatcaatatataatgtgaacaacaaaaaattaaat |
41704204 |
T |
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| Q |
201 |
cttacacatccaaattttagaatgcggaaaatgcaagttcataacattttccctatcggattttaaaattcaaatgtgtaaaatgcacctatgatgcaga |
300 |
Q |
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| T |
41704205 |
cttacacatccaaattttagaatgcggaaaatgcaagttcataacattttccctatcggattttaaaattcaaatgtgtaaaatgcacctatgatgcaga |
41704304 |
T |
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| Q |
301 |
aagatactag |
310 |
Q |
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| T |
41704305 |
aagatactag |
41704314 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 33826623 - 33826671
Alignment:
| Q |
71 |
tataattagagaatcattagatattgttagagtttgttaaaagtagtta |
119 |
Q |
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| T |
33826623 |
tataattagtgaattgatagatattgttagagtttgttaaaagtagtta |
33826671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 10908947 - 10908990
Alignment:
| Q |
76 |
ttagagaatcattagatattgttagagtttgttaaaagtagtta |
119 |
Q |
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| T |
10908947 |
ttagagatttattagatattgttagagtttgttaaatgtagtta |
10908990 |
T |
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