View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10621_high_9 (Length: 248)

Name: NF10621_high_9
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10621_high_9
NF10621_high_9
[»] chr5 (8 HSPs)
chr5 (158-232)||(41703648-41703722)
chr5 (113-232)||(41467374-41467493)
chr5 (27-130)||(41703717-41703820)
chr5 (125-212)||(41506883-41506970)
chr5 (158-220)||(41513161-41513223)
chr5 (111-197)||(41497620-41497706)
chr5 (158-220)||(41522096-41522158)
chr5 (111-185)||(33077964-33078038)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 41703722 - 41703648
Alignment:
Q  158 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatg 232  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41703722 aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatg 41703648  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 41467374 - 41467493
Alignment:
Q  113 atgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg 212  Q
    ||||| ||||| | ||||||||||| |||||||||| |  |||| |||||||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  41467374 atgaaccatcggaggaagtagaagtcgaggtttcactgtcgctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttg 41467473  T
Q  213 tgttgccagtgccactgatg 232  Q
     |||| ||| ||| ||||||    
T  41467474 ggttgtcagggcccctgatg 41467493  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 41703820 - 41703717
Alignment:
Q  27 ataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcatcgaaa 126  Q
    |||||||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  41703820 ataatagttcaataatcctgcactgtctgcctacatgtttttcttttttgcaccagaccatattgtaagattatggagaaaaggcaatgaaccatcgaaa 41703721  T
Q  127 gaag 130  Q
    ||||    
T  41703720 gaag 41703717  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 41506883 - 41506970
Alignment:
Q  125 aagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg 212  Q
    |||||| ||||||||||||||||| |  |||| |||||||||||||||||||  ||||||||||||| ||||| ||| ||| ||||||    
T  41506883 aagaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg 41506970  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
Q  158 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 220  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||||    
T  41513161 aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41513223  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 41497620 - 41497706
Alignment:
Q  111 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaa 197  Q
    ||||||||||||  | |||| ||||||||||||||||| |  |||| |||||||||||||||||||| ||| ||| ||||| |||||    
T  41497620 caatgaatcatcagaggaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgactgtgttaaccgcatttgcaaa 41497706  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
Q  158 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 220  Q
    |||||||||||||||| |   ||||||||||||||| ||||||||||| ||||||||||||||    
T  41522096 aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41522158  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 33077964 - 33078038
Alignment:
Q  111 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaac 185  Q
    |||| |||||||| | || ||||||||||||||||||| |  | || ||||| |||||||||||||| |||||||    
T  33077964 caataaatcatcggaggacgtagaagtggaggtttcactgtcggtgaaagaatattttcttttgactgtgtcaac 33078038  T

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