View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_1 (Length: 516)
Name: NF10621_low_1
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 34278220 - 34277743
Alignment:
| Q |
19 |
aatagaggggtaaacaagtaaactacaaaactaaccaatcaaattacaataaagttgggagttgagtttgaaaccctagttagagtgcctgtctgtcttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34278220 |
aatagaggggtaaacaagtaaactacaaaactaaccaatcaaattacaataaagttgggagttgagtttgaaaccctagttagagtgcctgtctgtcttt |
34278121 |
T |
|
| Q |
119 |
gtctgtcagttaccctttgaaaatgcttattgagaacgcaatatacattctccaattctaaacgctaacccatttccttaaaataggtaacttttgttta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34278120 |
gtctgtcagttaccctttgaaaatgcttattgagaacgcaatatacattctccaattctaaacgccaacccatttccttaaaataggtaacttttgttta |
34278021 |
T |
|
| Q |
219 |
cccaaatctcacacatcatgtgatactattattctcttccatctgaggtatcagatctgggtcagacaggttttaagtttaaggttgtttttggtaccta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34278020 |
cccaaatctcacacatcatgtgatactattattctcttccatctgaggtatcagatctgggtcagacaggttttaagtttaaggttgtttttggtaccta |
34277921 |
T |
|
| Q |
319 |
ggattacgatgtgtaactgttcnnnnnnnnnnnnnnnnnnnntactggcagatctttaagcaccaaccaatatcgatcttcacttattattactaacaac |
418 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34277920 |
ggattacgatgtgtaactgttc----------ctctctctcttactggcagatctttaagcaccaaccaatgtcgatcttcacttattattactaacaac |
34277831 |
T |
|
| Q |
419 |
cacacactcatctcgtttctacatctatatatacatcatttttcaaccttcttcataccactcacatctctcaacccttcttctctct |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34277830 |
cacacactcatctcgtttctacatctatatatacatcatttttcaaccttcttcataccactcacatctctcaacccttcttctctct |
34277743 |
T |
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