View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_11 (Length: 340)
Name: NF10621_low_11
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 37 - 324
Target Start/End: Original strand, 1066646 - 1066932
Alignment:
| Q |
37 |
tatctaaagcatccgtgttttgatatatagtgatatttatgaggtgctatattttcccaattttgtagtcatggcagaatgttttgctagatagctctaa |
136 |
Q |
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| T |
1066646 |
tatctaaagcatccgtgttttgatttatagcgctatttatgaggtgctatattttcc-aattttgtattcatggcataatgtttggctagatggctctga |
1066744 |
T |
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| Q |
137 |
ttttgcattcttttgagtagaggcaccacgccacggtcagctagttacatgcataaacagaatcctgaacaaataacttctgaagcggatattgtggtca |
236 |
Q |
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| T |
1066745 |
tttttccttctttagagtagaggcaccatgccacagtcagctagttacatgcataaacaaaattctgaacaaataacgtctgaagcgaatattgtggtca |
1066844 |
T |
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| Q |
237 |
catatgttggaatcccaaacatagttcgtggtgattggataaagaaaggagttgcggtcatcgacacgggaactaatcaagttaatgt |
324 |
Q |
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| T |
1066845 |
catatattggaatccgaaacatagttcgtggtgattggataaagaaaggagctgtggtcattgacacgggaacaaatcaagttaatgt |
1066932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 120 - 321
Target Start/End: Original strand, 1042596 - 1042799
Alignment:
| Q |
120 |
ttgctagatagctctaattttgcattcttttgagtagaggcaccacgccacggtcagctagttacatgcataaaca--gaatcctgaacaaataacttct |
217 |
Q |
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| T |
1042596 |
ttgctaaatggctctgattttgccgtcttttgagtagaggcaccacgccacggtcagcttgttacatgcatatacaaagaatcctgaacgaataacgtct |
1042695 |
T |
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| Q |
218 |
gaagcggatattgtggtcacatatgttggaatcccaaacatagttcgtggtgattggataaagaaaggagttgcggtcatcgacacgggaactaatcaag |
317 |
Q |
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| T |
1042696 |
gaagcggatattgtggtcacagatgttggaatcccaaacatagttcgtggtgattggataaagaaaggagctgtcgtcattgatatgggaacaaatcaag |
1042795 |
T |
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| Q |
318 |
ttaa |
321 |
Q |
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|||| |
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| T |
1042796 |
ttaa |
1042799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 1080408 - 1080500
Alignment:
| Q |
229 |
tgtggtcacatatgttggaatcccaaacatagttcgtggtgattggataaagaaaggagttgcggtcatcgacacgggaactaatcaagttaa |
321 |
Q |
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| T |
1080408 |
tgtggtcacagatgttggaatcccatacatagttcgtggtgattcgataaagaaaggagctgtggtcattgacatgggaacaaatcaagttaa |
1080500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 6762554 - 6762519
Alignment:
| Q |
70 |
tatttatgaggtgctatattttcccaattttgtagt |
105 |
Q |
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| T |
6762554 |
tatttatgaggcgctatattttcccaattttgtagt |
6762519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 105
Target Start/End: Original strand, 34215463 - 34215498
Alignment:
| Q |
70 |
tatttatgaggtgctatattttcccaattttgtagt |
105 |
Q |
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| T |
34215463 |
tatttatgaggcgctatattttcccaattttgtagt |
34215498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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