View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_12 (Length: 337)
Name: NF10621_low_12
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 17754282 - 17753963
Alignment:
| Q |
1 |
tgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcggacatatcagagtcgctgaaagcaggatccttctcgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754282 |
tgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcggacatatcagagtcgctgaaagcaggatccttctcgac |
17754183 |
T |
|
| Q |
101 |
tgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaacttggttgagactataaaatggaaaagnnnnnnntaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |
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| T |
17754182 |
tgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaacttggttaagaccataaaatggaaaagaaaagaataa |
17754083 |
T |
|
| Q |
201 |
tatgacctatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctc |
300 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17754082 |
taagacctaccaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctc |
17753983 |
T |
|
| Q |
301 |
tatgaaatcaggagcaaaag |
320 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
17753982 |
tatgaaatcaggagcaaaag |
17753963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 17763269 - 17762950
Alignment:
| Q |
1 |
tgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcggacatatcagagtcgctgaaagcaggatccttctcgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17763269 |
tgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcggacatatcagagtcgctgaaagcaggatccttctcgac |
17763170 |
T |
|
| Q |
101 |
tgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaacttggttgagactataaaatggaaaagnnnnnnntaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |
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|
| T |
17763169 |
tgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaacttggttaagaccataaaatggaaaagaaaagaataa |
17763070 |
T |
|
| Q |
201 |
tatgacctatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctc |
300 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17763069 |
taagacctaccaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctc |
17762970 |
T |
|
| Q |
301 |
tatgaaatcaggagcaaaag |
320 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
17762969 |
tatgaaatcaggagcaaaag |
17762950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 15736233 - 15735914
Alignment:
| Q |
1 |
tgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcggacatatcagagtcgctgaaagcaggatccttctcgac |
100 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
15736233 |
tgtcttcctgttcaggaacatcgcggcagggagatgctggcagataacatagctcttcctcggacatatcagagtcgctgaaagcaggatccttctctac |
15736134 |
T |
|
| Q |
101 |
tgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaacttggttgagactataaaatggaaaagnnnnnnntaa |
200 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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|
| T |
15736133 |
tgtctcaatgtcaacgtcctcgtcttcattgacatcagatccttttacctgcaaggatatgaacttggttgagaccataaaatggaaaatgaaagaataa |
15736034 |
T |
|
| Q |
201 |
tatgacctatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaatctc |
300 |
Q |
| |
|
|| | ||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
15736033 |
taagtactatgaccatataacgttcacataccttatcagtctcagtattcaaatcaaattcatcttctcgctccacatactcctcattttcctcgatctc |
15735934 |
T |
|
| Q |
301 |
tatgaaatcaggagcaaaag |
320 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
15735933 |
tttgaaatcaggagcaaaag |
15735914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 17740298 - 17740109
Alignment:
| Q |
1 |
tgtcatcctgttcaggaacatcgggaatgggagataccggtagataacatagctcttcctcggacatatcagagtcgctgaaagcaggatccttctcgac |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
17740298 |
tgtcttcctgttcaggaacatcgggaatgggagatactggtagataacgtagctcttcctcagacatatcagagtcgctgaaattaggatccttctcgac |
17740199 |
T |
|
| Q |
101 |
tgttataatgtcaacgtcctcatcttcattgacatcagatacttttacctgcaaggatatgaacttggttgagactataaaatggaaaag |
190 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||||| |
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|
| T |
17740198 |
tgtcacaatgtcaacgtcctcatcttcattgacatcagatccttttacctgcaaggatatgaacttgattgagaccataaaaaggaaaag |
17740109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 198 - 320
Target Start/End: Complemental strand, 17739931 - 17739809
Alignment:
| Q |
198 |
taatatgacctatgaccatataacgttcacatacattatcagtgtcaggcttcaaatcaaattcatcttctcgctccacatactcctcattttcctcaat |
297 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17739931 |
taataagacctatgaccatataatgttcacatacattatcagtgtcaggattcaaatcaaattcatcttctcgctccacatactcctcattttcctcaat |
17739832 |
T |
|
| Q |
298 |
ctctatgaaatcaggagcaaaag |
320 |
Q |
| |
|
|||| |||||||||||||||||| |
|
|
| T |
17739831 |
ctctttgaaatcaggagcaaaag |
17739809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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