View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10621_low_13 (Length: 321)

Name: NF10621_low_13
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10621_low_13
NF10621_low_13
[»] chr4 (1 HSPs)
chr4 (19-310)||(49819420-49819710)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 49819710 - 49819420
Alignment:
Q  19 cctacaccaaatccaccatggttgatcaaaccacatcttacaacgatccaacctcttcagcacaaaaacatctcatagagtaaaaagtcaccactcaact 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49819710 cctacaccaa-tccaccatggttgatcaaaccacatcttacaacgatccaacctcttcagcacaaaaacatctcatagagtaaaaagtcaccactcaact 49819612  T
Q  119 acctatcaatcttaactctatcaactattttgtttggtacgtcaaaacagatccactatcttcttgttgctcgccatcttgttgaccatgtcatgaaagg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49819611 acctatcaatcttaactctatcaactattttgtttggtacgtcaaaacagatccactatcttcttgttgctcgacatcttgttgaccatgtcatgaaagg 49819512  T
Q  219 ataaagaaacttctaattgttacagtacaaatttctctacatggtctttcttggcccgtgtgatcccgaagttcgtgatgcactattttcat 310  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49819511 ataaagaaacttctaattgttacagtacaaatttctcttcatggtctttcttggctcgtgtgatcccgaagttcgtgatgcactattttcat 49819420  T

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