View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_14 (Length: 316)
Name: NF10621_low_14
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 31160258 - 31160559
Alignment:
| Q |
14 |
caaaaagaacagataacaaactatacctgcttctttggcagctgaaaagctggcatgcacattgtaaattcaaagccaa-------aaccacaagcaaac |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31160258 |
caaaaagaacagataacaaactatacctgcttctttggcagctgaaaagctggcatgcacattgtaaattcaaagccaaaacccaaaaccacaagcaaac |
31160357 |
T |
|
| Q |
107 |
tgaacagaaggtgagaaaataattgttgcggtgttataagcaaatttagtaaaaacaagttcataagttaaggagaatgctaaatagtaacttctagaag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
31160358 |
tgaacagaaggtgagaaaataattgttgcggtgttataagcaaatttagtaaaaacaagttcataagttaaggaaaatgctaaatagtaacttttagaag |
31160457 |
T |
|
| Q |
207 |
catctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatcacccttcttc |
306 |
Q |
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| ||||||| | |||||||||||||||| ||||||||||| |||||||||||| || |||||||| || |||||||||||||||||||||||||||||| |
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| T |
31160458 |
cctctagagcttgaaagaaagactttaaataccctcattatttgaggcttaaggcacgacaaatcaagctcatagagggctataaatatcacccttcttc |
31160557 |
T |
|
| Q |
307 |
tc |
308 |
Q |
| |
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|| |
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|
| T |
31160558 |
tc |
31160559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 24909259 - 24909153
Alignment:
| Q |
195 |
aacttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaata |
294 |
Q |
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||||||||||||| ||||||| ||| |||||||||| || |||||||||||||||| |||||||||| | ||| ||||| || | ||||||||||||| |
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| T |
24909259 |
aacttctagaagcctctagagctcggcagaaagactt-aagtaccctcattacttgaagcttaagtcacgataaaacaggcccacaaagggctataaata |
24909161 |
T |
|
| Q |
295 |
tcaccctt |
302 |
Q |
| |
|
||||||| |
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| T |
24909160 |
ccaccctt |
24909153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 24911480 - 24911374
Alignment:
| Q |
195 |
aacttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaata |
294 |
Q |
| |
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||||||||||||| ||||||| ||| |||||||||| || |||||||||||||||| |||||||||| | ||| ||||| || | ||||||||||||| |
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| T |
24911480 |
aacttctagaagcctctagagctcggcagaaagactt-aagtaccctcattacttgaagcttaagtcacgataaaacaggcccacaaagggctataaata |
24911382 |
T |
|
| Q |
295 |
tcaccctt |
302 |
Q |
| |
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||||||| |
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| T |
24911381 |
ccaccctt |
24911374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 14082890 - 14082787
Alignment:
| Q |
197 |
cttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatc |
296 |
Q |
| |
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||||||||||| ||||||| | | ||||| |||| || ||||||||||||||| ||||||||||| ||| ||||| || ||| ||||||||||||||| |
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| T |
14082890 |
cttctagaagcctctagagcttggcagaaaaactt-aagtaccctcattacttg-ggcttaagtcacgacagatcagacatataaagggctataaatatc |
14082793 |
T |
|
| Q |
297 |
accctt |
302 |
Q |
| |
|
|||||| |
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|
| T |
14082792 |
accctt |
14082787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 14654359 - 14654302
Alignment:
| Q |
204 |
aagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtca |
262 |
Q |
| |
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|||| ||||||| ||| |||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
14654359 |
aagcctctagagctcggcagaaagactt-aagtaccctcattacttgaggcttaagtca |
14654302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 12697365 - 12697261
Alignment:
| Q |
197 |
cttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatc |
296 |
Q |
| |
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||||||||||| ||||||| ||| ||||||| ||||| | ||||||||||||| ||||||||||| |||||| || |||||||||||||||||| | |
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| T |
12697365 |
cttctagaagcctctagagctcggcagaaaga-tttaaatgccctcattacttggggcttaagtcacaggaaatcaagcccatagagggctataaatacc |
12697267 |
T |
|
| Q |
297 |
accctt |
302 |
Q |
| |
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|||||| |
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|
| T |
12697266 |
accctt |
12697261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 302
Target Start/End: Complemental strand, 9375670 - 9375568
Alignment:
| Q |
199 |
tctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaatatcac |
298 |
Q |
| |
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||||||||| ||||||||| || |||||||||| ||| ||||||||||||| ||||||||||| | | ||||| |||||||||||||||||| ||| |
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| T |
9375670 |
tctagaagcctctagagttggatagaaagacttaaatg-ccctcattacttggggcttaagtcacgagagttcaggtccatagagggctataaataccac |
9375572 |
T |
|
| Q |
299 |
cctt |
302 |
Q |
| |
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|||| |
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|
| T |
9375571 |
cctt |
9375568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 9161087 - 9161183
Alignment:
| Q |
197 |
cttctagaagcatctagagttcgaaagaaagactttaattaccctcattacttgaggcttaagtcattacaaatcaggcacatagagggctataaata |
294 |
Q |
| |
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||||||||||| ||||||| ||| | |||||||| || ||||||| |||||||||||||| |||| ||| ||||||| | |||||||||||||||| |
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| T |
9161087 |
cttctagaagcgtctagagctcggcataaagactt-aagtaccctcgttacttgaggcttatgtcacgacagatcaggcccctagagggctataaata |
9161183 |
T |
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