View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_15 (Length: 308)
Name: NF10621_low_15
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 139 - 292
Target Start/End: Complemental strand, 5982763 - 5982610
Alignment:
| Q |
139 |
aaatttcagattagccttttgactttctgtcaaaaactatattatcataattcagaacccaaatatcaataacaaaataagaacttaaacaaacaaacat |
238 |
Q |
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| T |
5982763 |
aaatttcagattagccttttgacattctgtcaaaaactatattatcataattcagaacccaaatatcaataacaaaataagaacttaatcaaacaaacat |
5982664 |
T |
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| Q |
239 |
agaaatattgagttcaagaaatcttacaaaaatgcaactgaaaaacaaaacaaa |
292 |
Q |
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| T |
5982663 |
agaaatattgagttcaagaaatcttacgaaaatgaaactgaaaaacaaaacaaa |
5982610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 5982896 - 5982807
Alignment:
| Q |
11 |
caaaggtacatttccatc---cacttccttcttcttccttgttttcctattctctacaagagtttcaattgtcattttcagctttcaagt |
97 |
Q |
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| T |
5982896 |
caaaggtacatttccatcaaccacttccttcttcttccttgttttcctattctctacaagagtttcaattgtcattttcagctttcaagt |
5982807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 5961300 - 5961194
Alignment:
| Q |
182 |
atcataattcagaacccaaatatcaataacaaaataagaacttaaacaaacaaacatagaaatattgagttcaagaaatcttacaaaaatgcaactgaaa |
281 |
Q |
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|||||||||||||||| ||||||||||| ||||||||| |||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
5961300 |
atcataattcagaaccgaaatatcaatagcaaaataagcacttaatcaaacaaattcagagatattgagttcaagaaatcttacaaaaatgcaaccaaaa |
5961201 |
T |
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| Q |
282 |
aacaaaa |
288 |
Q |
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||||||| |
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| T |
5961200 |
aacaaaa |
5961194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 5932564 - 5932503
Alignment:
| Q |
30 |
acttccttcttcttccttgttttcctattctctacaagagtttcaattgtcattttcagctttcaagt |
97 |
Q |
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|||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |
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| T |
5932564 |
acttccttgttcttccttgttttcttcttctc------agtttcaattgtcattttcagctttcaagt |
5932503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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