View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10621_low_16 (Length: 291)
Name: NF10621_low_16
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 113 - 272
Target Start/End: Complemental strand, 42495346 - 42495187
Alignment:
| Q |
113 |
ttctaaaggcacatacatgtataaatgatcataattatatttcaagataaaaaatgattccaaagtctaacacattttttgatcagcccccaaaatttta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42495346 |
ttctaaaggcacatacatgtataaatgatcataattatatttcaagataaaaaatgattccaaagtctaacacattttttgatcagcccccaaaatttta |
42495247 |
T |
|
| Q |
213 |
tttaaagattagtataattgccatctcaattatttggtttctttttcctatgatcaatct |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42495246 |
tttaaagattagtataattgccatctcaattatttggtttctttttcctatgatcaatct |
42495187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 42493217 - 42493015
Alignment:
| Q |
21 |
taatctatacctaacatcttgactcaatttcttggggactgataaaaaatcgagttggactttagaaggcgtgtttgatcctgaaacatggcttctaaag |
120 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || |||||||||||| || ||||||||| ||||||||||||| ||| ||||| | ||||||||||| |
|
|
| T |
42493217 |
taatccatacctaacatcttgactcaatttcttaggaactgataaaaaaacgtgttggacttgagaaggcgtgtttcatcttgaaagacggcttctaaag |
42493118 |
T |
|
| Q |
121 |
gcacatacatgtataaatgatcataattatatttcaagataa-----aaaatga-ttccaaagtctaacacattttttgatcagcccccaaaattttatt |
214 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
42493117 |
gcacatacatgtataaatgattataattatatttcaagaaaagatgaaaaatgacttccaaagtctaacgcatttttt-attagcccccaaaattttatt |
42493019 |
T |
|
| Q |
215 |
taaa |
218 |
Q |
| |
|
|||| |
|
|
| T |
42493018 |
taaa |
42493015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42493269 - 42493233
Alignment:
| Q |
1 |
gtgaaaatgataggtcattctaatctatacctaacat |
37 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42493269 |
gtgaaaatgataggtcattctaatccatacctaacat |
42493233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University