View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10621_low_2 (Length: 479)
Name: NF10621_low_2
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Complemental strand, 8453127 - 8452677
Alignment:
| Q |
13 |
tctttcatgcaggttcgttctacttctggtgtacatttgagcaaatcccttcattccaacttacaaaaagaaaccagtactgatattccaagcaacatga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8453127 |
tctttcatgcaggttcgttctacttctggtgtacattcgagcaaatcctttcattccaacttacaaaaagaaaccattactgatattccaagcaacatga |
8453028 |
T |
|
| Q |
113 |
ggcatgattatgtgaaaattcacacatccttttcctctataaagtaatattatctgctcttcattcttcttgtaatgtcttaaatattatggatttatca |
212 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8453027 |
ggcatgattatgtgaaaattgacacatccttttcctctataaagtaatattatctgctcttcattcttcttgtaatgtcttaaatat---ggatttatca |
8452931 |
T |
|
| Q |
213 |
gactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccatccatccttggcctttgattaattatttaacttgaacttgatctt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8452930 |
gactttaccaactgttgccttttctcttatcatgctcctcagtatccaatatccatccatccttggcctttgattaattatttaacttgaacttgatctt |
8452831 |
T |
|
| Q |
313 |
ggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacatttaatttgatgatcattatgctgtatttcctattgttccttagt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8452830 |
ggtgcaagccggttacaagttcaagatagggataaaggtttgaatttttattacatttaatttgatgatcattatgttgtatttcctattgttccttagt |
8452731 |
T |
|
| Q |
413 |
ttaca-ttttnnnnnnntgataatttaattaatatccccctcttcatccttgcctatg |
469 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8452730 |
ttacatttttccccccctgataat----ttaatatccccctcttcatccttgcctatg |
8452677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University