View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_23 (Length: 266)
Name: NF10621_low_23
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 7409078 - 7409315
Alignment:
| Q |
18 |
tagccttccttcttatgcttcaagatctgcagcttagaatgttgtctccttacggcaatttcgcaagtcgacatattccaatgaaactaggacagttctc |
117 |
Q |
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| T |
7409078 |
tagccttccttcttatgcttcaagatctgcagcttagaatgttgtctccttacggcaatttcgcaagtcgacatattccaatgaaactaggacagttctc |
7409177 |
T |
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| Q |
118 |
tcaaggggttgttcttgatttgtcagaaaaagttgtctggtccttttccatcacatgtttgtaaacttttatatgttcttgttttttattttctcgtgtt |
217 |
Q |
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| T |
7409178 |
tcaaggggttgttcttgatttgtcagaaaaagttgtctggtccttttccatcacatgtttgtaaacttttatatgttcttgttttttattttctcgtgtt |
7409277 |
T |
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| Q |
218 |
atgccagagagctacgcacatttctcttaaggtttcat |
255 |
Q |
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| T |
7409278 |
atgccagagagctacgcacatttctcttaaggtttcat |
7409315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 7422910 - 7423008
Alignment:
| Q |
104 |
ctaggacagttctctcaaggggttgttcttgatttgtcagaaaaagttgtctggtccttttccatcacatgtttgtaaacttttatatgttcttgtttt |
202 |
Q |
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| T |
7422910 |
ctaggacagttctcttgagtggttgttcatgatttgtcagaaagagtggtttggtcctttgccaacatatgtctgtaaactgttatattttcttgtttt |
7423008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 765961 - 766003
Alignment:
| Q |
213 |
gtgttatgccagagagctacgcacatttctcttaaggtttcat |
255 |
Q |
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| T |
765961 |
gtgttatgccagagagctatgcacatttctgttaaggtttcat |
766003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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