View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_27 (Length: 250)
Name: NF10621_low_27
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 42103959 - 42104198
Alignment:
| Q |
1 |
attctctggctgcctaataattggatcaatgttcacggctaggccaggctgcagatgctgatgctgcccttcctgacgaggaccatattccgcgactgta |
100 |
Q |
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| T |
42103959 |
attctctggctgcctaat---tggatcaatgttcacggctaggccggactgcagatgctgatgctgcccttcctgacgaggaccatattccgcgactgta |
42104055 |
T |
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| Q |
101 |
aggtcaagattataagcagtttcatgaggcatgataggagggtagtgcaatggccttccactcacatacatgttttccaaagaaactatgttgtttgcat |
200 |
Q |
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| T |
42104056 |
aggtcaagattataagcagtttcatgaggcatgtcaggagggtagtgcaatggccttccactaacatacatgttttccaaagaaactatgttgtttgcat |
42104155 |
T |
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| Q |
201 |
gtatataagagtaattttcttgtgcctgagactgcctttgctt |
243 |
Q |
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| T |
42104156 |
gtatataagagtaattttcttgtgcctgagactgccttggctt |
42104198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 42113189 - 42113277
Alignment:
| Q |
44 |
ccaggctgcagatgctgatgctgcccttcctgacgaggaccatattccgcgactgtaaggtcaagattataagcagtttcatgaggcat |
132 |
Q |
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||||||||||| || ||||| ||||| ||| ||| |||||||||| | | ||||| | || ||||||||||||| |||||||||||| |
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| T |
42113189 |
ccaggctgcagttgttgatgttgcccatcccgactaggaccatatcctgtgactgaattgtacagattataagcagcttcatgaggcat |
42113277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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