View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10621_low_29 (Length: 248)

Name: NF10621_low_29
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10621_low_29
NF10621_low_29
[»] chr5 (8 HSPs)
chr5 (158-232)||(41703648-41703722)
chr5 (113-232)||(41467374-41467493)
chr5 (27-130)||(41703717-41703820)
chr5 (125-212)||(41506883-41506970)
chr5 (158-220)||(41513161-41513223)
chr5 (111-197)||(41497620-41497706)
chr5 (158-220)||(41522096-41522158)
chr5 (111-185)||(33077964-33078038)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 158 - 232
Target Start/End: Complemental strand, 41703722 - 41703648
Alignment:
Q  158 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatg 232  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41703722 aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatg 41703648  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 41467374 - 41467493
Alignment:
Q  113 atgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg 212  Q
    ||||| ||||| | ||||||||||| |||||||||| |  |||| |||||||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  41467374 atgaaccatcggaggaagtagaagtcgaggtttcactgtcgctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttg 41467473  T
Q  213 tgttgccagtgccactgatg 232  Q
     |||| ||| ||| ||||||    
T  41467474 ggttgtcagggcccctgatg 41467493  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 41703820 - 41703717
Alignment:
Q  27 ataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcatcgaaa 126  Q
    |||||||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  41703820 ataatagttcaataatcctgcactgtctgcctacatgtttttcttttttgcaccagaccatattgtaagattatggagaaaaggcaatgaaccatcgaaa 41703721  T
Q  127 gaag 130  Q
    ||||    
T  41703720 gaag 41703717  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 41506883 - 41506970
Alignment:
Q  125 aagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg 212  Q
    |||||| ||||||||||||||||| |  |||| |||||||||||||||||||  ||||||||||||| ||||| ||| ||| ||||||    
T  41506883 aagaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg 41506970  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
Q  158 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 220  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||||    
T  41513161 aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41513223  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 41497620 - 41497706
Alignment:
Q  111 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaa 197  Q
    ||||||||||||  | |||| ||||||||||||||||| |  |||| |||||||||||||||||||| ||| ||| ||||| |||||    
T  41497620 caatgaatcatcagaggaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgactgtgttaaccgcatttgcaaa 41497706  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
Q  158 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 220  Q
    |||||||||||||||| |   ||||||||||||||| ||||||||||| ||||||||||||||    
T  41522096 aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41522158  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 33077964 - 33078038
Alignment:
Q  111 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaac 185  Q
    |||| |||||||| | || ||||||||||||||||||| |  | || ||||| |||||||||||||| |||||||    
T  33077964 caataaatcatcggaggacgtagaagtggaggtttcactgtcggtgaaagaatattttcttttgactgtgtcaac 33078038  T

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