View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_3 (Length: 420)
Name: NF10621_low_3
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 20 - 413
Target Start/End: Original strand, 32240235 - 32240630
Alignment:
| Q |
20 |
ctctctggggtttccactcacagagcacctataaaaggtgttaaacttttgtcagaaggtttgaaaattttgtcttttgttcagagattctgaaatcccc |
119 |
Q |
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| T |
32240235 |
ctctctggggtttccactcacagagcacctataaaaggtgttaaacttttgtcagaaggtttgaaaattttgtcttttgttcagagattctgaaaccccc |
32240334 |
T |
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| Q |
120 |
ctgttttaatttaattttcacttggattggttgattaaacaatgcattttatctgtcnnnnnnncactataaattttacttcatttgctggaaatttctg |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32240335 |
ctgttttaatttaattttcacttggattggttgattaaacaatgcattttatctgtctttttttcactataaattttacttcatttgctggaaatttctg |
32240434 |
T |
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| Q |
220 |
gtttagggtatatgtggtttctgcaaaaggtaattaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttctttt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240435 |
gtttagggtatatgtggtttctgcaaaaggtaattaccatgtgtcaggaagtttgaaactattggcaatgggtcagagatactgatttttcccttctttt |
32240534 |
T |
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| Q |
320 |
cttttaattgattctgacactgcgtgtataaaagatgaaattcata--tgccctttttctctataaaatggtgcttgctgtgttcatttcatctca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32240535 |
cttttaattgattctgacactgcgtgtataaaagatgaaattcatatgtgccctttttctctataaaatggtgcttgctgtgttcatttcatctca |
32240630 |
T |
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