View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10621_low_31 (Length: 244)

Name: NF10621_low_31
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10621_low_31
NF10621_low_31
[»] chr1 (2 HSPs)
chr1 (100-206)||(19722261-19722369)
chr1 (3-76)||(19722088-19722161)
[»] chr5 (1 HSPs)
chr5 (3-76)||(8772153-8772226)
[»] chr2 (1 HSPs)
chr2 (3-76)||(7558490-7558563)
[»] chr4 (1 HSPs)
chr4 (28-155)||(22730583-22730711)
[»] chr7 (1 HSPs)
chr7 (204-241)||(23209173-23209210)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 19722261 - 19722369
Alignment:
Q  100 tttattaccattgaaaaccgtttttcataggaggtt--ctattataaaaagaaaattttgaatttgnnnnnnntttaaattgaaccatcgaaccatgtaa 197  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||    
T  19722261 tttattatcattgaaaaccgtttttcataggaggttcactattataaaaagaaaattttaaatttgaaaaaaaattaaattgaaccatcgaaccatgtaa 19722360  T
Q  198 atgtaagtg 206  Q
    |||||||||    
T  19722361 atgtaagtg 19722369  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 19722088 - 19722161
Alignment:
Q  3 tttccatctaaattgtaacccatggtagccacaatacttgactcaattacgagtatttaatatgccattaatac 76  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||    
T  19722088 tttccatctaaattgtagcccatggtagccacagtacttgactcaattacgagtatttaatacgctattaatac 19722161  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 8772226 - 8772153
Alignment:
Q  3 tttccatctaaattgtaacccatggtagccacaatacttgactcaattacgagtatttaatatgccattaatac 76  Q
    ||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||||||| || ||||||||    
T  8772226 tttccatttaaattgtatcccatggtagccacaatacttggttcaattacgagtatttaatacgctattaatac 8772153  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 76
Target Start/End: Original strand, 7558490 - 7558563
Alignment:
Q  3 tttccatctaaattgtaacccatggtagccacaatacttgactcaattacgagtatttaatatgccattaatac 76  Q
    ||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||||||| || ||||||||    
T  7558490 tttccatataaattgtatcccatggtagccacaatacttggttcaattacgagtatttaatacgctattaatac 7558563  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 22730583 - 22730711
Alignment:
Q  28 tagccacaatacttgactcaattacgagtatttaatatgccattaatacattttaatagcatttttatgtcatttattaccattgaaaaccgtttttcat 127  Q
    |||| ||||||||||| ||||||| | || ||||||| ||  |||||||  |||||||||||||||||| | | ||||||  ||||| ||||||| ||||    
T  22730583 tagctacaatacttgattcaatta-gtgtctttaatacgcttttaatacgctttaatagcatttttatgccctctattacggttgaacaccgtttctcat 22730681  T
Q  128 aggaggtt--ctattataaaaagaaaattt 155  Q
    || |||||  ||||||| ||||||||||||    
T  22730682 agcaggttcactattatgaaaagaaaattt 22730711  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 23209210 - 23209173
Alignment:
Q  204 gtgtttcctttcctgaagcatttgttgaggttctctgc 241  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  23209210 gtgtttccttccctgaagcctttgttgaggttctctgc 23209173  T

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