View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_32 (Length: 240)
Name: NF10621_low_32
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 49546088 - 49546298
Alignment:
| Q |
1 |
tcatatgatagtgtcctgcatcnnnnnnnnnagcaaccactatggctacaagtgaactgagataactaaacacaaagtttaaagagtgaaaagtatttga |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49546088 |
tcatatgatagtgtcctgcatctttttttttagcaaccactatggctacaagtgaactgagataactaaacacaaagtttaaagagtgaaaagtatttga |
49546187 |
T |
|
| Q |
101 |
accaaaacaattaatatatatgcatgtatgtactgaacttgttcgctatcgttggatctgtccctccttactgatcatatgtgctcaagaagccaccaat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49546188 |
accaaaacaattaatatata------------ctgaacttgttcgctatcgttggatctgtccctccttactgatcatatgtgctcaagaagccaccaat |
49546275 |
T |
|
| Q |
201 |
aaatccagctccattgcaattcc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
49546276 |
aaatccagctccattgcaattcc |
49546298 |
T |
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