View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_34 (Length: 240)
Name: NF10621_low_34
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 21522362 - 21522579
Alignment:
| Q |
18 |
tgtaggatatgcatcggagttgcacgtggacttgaatttctacatgatcaagaacaaccaaataatgttcatagggatatacgagcaagcaatatagtcc |
117 |
Q |
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| T |
21522362 |
tgtaggatatgtatcggagttgcacgtggacttgaatttctacatgatcaagaacaaccaaataatgttcacagggatatacgagcaagcaatatagtcc |
21522461 |
T |
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| Q |
118 |
tggataaagaccttaaaccgaagatttcagattttggtcttgcaaaccttattcgacaagacatcactcgtctcatctcattgtaagtgtgtacaaatta |
217 |
Q |
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| T |
21522462 |
tcgatgaagaccttaaaccgaagatttcagattttggtcttgcaaaccttattcgacaagatgtcactcgtctcatctcattgtaagtgtgtacaaatta |
21522561 |
T |
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| Q |
218 |
atttggaagcatgtatga |
235 |
Q |
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| T |
21522562 |
atttggaagcatgtatga |
21522579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 21528262 - 21528406
Alignment:
| Q |
19 |
gtaggatatgcatcggagttgcacgtggacttgaatttctacatgatcaagaacaaccaaataatgttcatagggatatacgagcaagcaatatagtcct |
118 |
Q |
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| T |
21528262 |
gtaggatatgccttggagttgcacgtggacttgcctttctccatgaggaagtactgccacatattgttcacagggatataaaagcaagcaatattctcct |
21528361 |
T |
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| Q |
119 |
ggataaagaccttaaaccgaagatttcagattttggtcttgcaaa |
163 |
Q |
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| T |
21528362 |
cgacaaagatcttacacctaagatttcagatttcggtcttgcaaa |
21528406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 27005229 - 27005156
Alignment:
| Q |
85 |
ttcatagggatatacgagcaagcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtctt |
158 |
Q |
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| T |
27005229 |
ttcatagggatacaaaagcaagcaatattctccttgacaaagatcttacaccgaagatttcggattttggtctt |
27005156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 29364104 - 29364190
Alignment:
| Q |
85 |
ttcatagggatatacgagcaagcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtcttgcaaaccttattc |
171 |
Q |
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| T |
29364104 |
ttcatagggatataaaagctagcaatattctccttgacaaagaccttacaccgaagatttctgattttggtcttgcaaagcttattc |
29364190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 29357240 - 29357324
Alignment:
| Q |
85 |
ttcatagggatatacgagcaagcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtcttgcaaaccttat |
169 |
Q |
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| T |
29357240 |
ttcatagggatataaaagcaagcaatattctccttgacaaagaccttacacccaagatttccgactttggtcttgcaaagcttat |
29357324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 35536014 - 35536087
Alignment:
| Q |
85 |
ttcatagggatatacgagcaagcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtctt |
158 |
Q |
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|||||||||||| | |||||||||||| |||| || ||||| |||| |||||||||||| |||||||||||| |
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| T |
35536014 |
ttcatagggatacaaaagcaagcaatattctccttgacaaagatcttacaccgaagatttcggattttggtctt |
35536087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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