View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10621_low_4 (Length: 397)

Name: NF10621_low_4
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10621_low_4
NF10621_low_4
[»] chr4 (13 HSPs)
chr4 (24-382)||(47059681-47060039)
chr4 (24-382)||(47081763-47082121)
chr4 (30-86)||(25779718-25779774)
chr4 (25-87)||(23870039-23870101)
chr4 (25-87)||(36071632-36071694)
chr4 (25-62)||(7540513-7540550)
chr4 (26-87)||(29118464-29118525)
chr4 (25-65)||(25790455-25790495)
chr4 (27-63)||(38087653-38087689)
chr4 (39-87)||(43515932-43515980)
chr4 (28-87)||(7853290-7853349)
chr4 (33-87)||(3643220-3643273)
chr4 (25-87)||(55147901-55147963)
[»] chr8 (10 HSPs)
chr8 (25-87)||(13580433-13580495)
chr8 (25-87)||(26835669-26835731)
chr8 (28-87)||(28376652-28376711)
chr8 (25-87)||(22930313-22930375)
chr8 (25-87)||(34142016-34142078)
chr8 (28-78)||(4350755-4350805)
chr8 (24-77)||(13236154-13236208)
chr8 (43-88)||(32036759-32036804)
chr8 (27-87)||(31383468-31383528)
chr8 (25-77)||(39612702-39612754)
[»] chr7 (11 HSPs)
chr7 (25-88)||(21292804-21292867)
chr7 (25-86)||(9429412-9429473)
chr7 (25-87)||(35812606-35812668)
chr7 (35-87)||(3940726-3940778)
chr7 (25-77)||(30095845-30095897)
chr7 (25-68)||(15134545-15134588)
chr7 (33-68)||(26914437-26914472)
chr7 (33-84)||(31329665-31329716)
chr7 (25-83)||(33480569-33480627)
chr7 (27-85)||(40351845-40351903)
chr7 (27-60)||(37996503-37996536)
[»] chr6 (8 HSPs)
chr6 (25-84)||(10668956-10669015)
chr6 (28-87)||(12174315-12174374)
chr6 (30-87)||(9815747-9815804)
chr6 (30-88)||(6274004-6274063)
chr6 (27-87)||(34969390-34969450)
chr6 (25-60)||(33344788-33344823)
chr6 (25-60)||(35122053-35122088)
chr6 (27-77)||(4337976-4338026)
[»] chr2 (7 HSPs)
chr2 (25-88)||(40876999-40877062)
chr2 (25-87)||(5163784-5163846)
chr2 (34-84)||(38035395-38035445)
chr2 (25-77)||(4206647-4206699)
chr2 (28-88)||(18197333-18197392)
chr2 (25-77)||(17271348-17271400)
chr2 (25-77)||(34909424-34909476)
[»] chr1 (10 HSPs)
chr1 (25-87)||(1240419-1240481)
chr1 (28-87)||(8246795-8246854)
chr1 (31-88)||(3265539-3265596)
chr1 (27-87)||(33735825-33735885)
chr1 (25-68)||(23897989-23898032)
chr1 (26-88)||(1153798-1153860)
chr1 (33-79)||(35204298-35204344)
chr1 (34-87)||(29664192-29664245)
chr1 (25-53)||(35405315-35405343)
chr1 (24-88)||(45385310-45385374)
[»] chr5 (9 HSPs)
chr5 (25-85)||(7887264-7887324)
chr5 (24-88)||(502796-502859)
chr5 (28-87)||(16570571-16570630)
chr5 (25-77)||(10325717-10325769)
chr5 (25-85)||(12263725-12263785)
chr5 (33-88)||(16569374-16569429)
chr5 (33-87)||(32257760-32257814)
chr5 (27-87)||(3193597-3193657)
chr5 (25-77)||(39542402-39542454)
[»] chr3 (8 HSPs)
chr3 (28-88)||(2758070-2758130)
chr3 (27-77)||(11383585-11383635)
chr3 (33-87)||(33510172-33510226)
chr3 (34-87)||(15670919-15670972)
chr3 (28-68)||(8266689-8266729)
chr3 (33-77)||(18257971-18258015)
chr3 (27-87)||(19149925-19149985)
chr3 (36-84)||(42417929-42417977)
[»] scaffold0531 (1 HSPs)
scaffold0531 (31-87)||(9699-9755)
[»] scaffold0128 (1 HSPs)
scaffold0128 (35-88)||(18557-18610)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 24 - 382
Target Start/End: Original strand, 47059681 - 47060039
Alignment:
Q  24 aaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaacctgatcaatcttttgggacaaaaaatacaagagtg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47059681 aaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaacctgatcaatcttttgggacaaaaaatacaagagtg 47059780  T
Q  124 aattgatcattaagaaattagaatcataattttcttttgggacgcttacattagtttcccaatcctactatggcttccacccttgctttgttatcaatac 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47059781 aattgatcattaagaaataagaatcataattttcttttgggacgcttacgttagtttcccaatcctactatggcttccacccttgctttgttatcaatac 47059880  T
Q  224 tgttctccatcttcttcatgctatttacattaatagaagccacacacaatacaactgaaaaaactcaacccattatcattccattggggtctttcctcgc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47059881 tgttctccatcttcttcatgctatttacattaatagaagccacacacaatacaactgaaaaaactcaacccattatcattccattggggtctttcctcgc 47059980  T
Q  324 tcctaaaggtgaaaatacttcgtggcaatcaagttctggccattttgcttttgggtttt 382  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47059981 tcctaaaggtgaaaatacttcatggcaatcaagttctggccattttgcttttgggtttt 47060039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 24 - 382
Target Start/End: Complemental strand, 47082121 - 47081763
Alignment:
Q  24 aaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaacctgatcaatcttttgggacaaaaaatacaagagtg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47082121 aaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaacctgatcaatcttttgggacaaaaaatacaagagtg 47082022  T
Q  124 aattgatcattaagaaattagaatcataattttcttttgggacgcttacattagtttcccaatcctactatggcttccacccttgctttgttatcaatac 223  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47082021 aattgatcattaagaaataagaatcataattttcttttgggacgcttacgttagtttcccaatcctactatggcttccacccttgctttgttatcaatac 47081922  T
Q  224 tgttctccatcttcttcatgctatttacattaatagaagccacacacaatacaactgaaaaaactcaacccattatcattccattggggtctttcctcgc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47081921 tgttctccatcttcttcatgctatttacattaatagaagccacacacaatacaactgaaaaaactcaacccattatcattccattggggtctttcctcgc 47081822  T
Q  324 tcctaaaggtgaaaatacttcgtggcaatcaagttctggccattttgcttttgggtttt 382  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47081821 tcctaaaggtgaaaatacttcatggcaatcaagttctggccattttgcttttgggtttt 47081763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 25779774 - 25779718
Alignment:
Q  30 caccaaaattattatttttacttattagttagtattatacaaatatatttcttttta 86  Q
    ||||||||||||||||||||||||||||||||||  || || |||||||||||||||    
T  25779774 caccaaaattattatttttacttattagttagtacgatgcacatatatttcttttta 25779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 23870039 - 23870101
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| | |||||| | |||||||    
T  23870039 aggggcaccaaaattattatttttacttagtagttagtactatatagatatatatttttttaa 23870101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 36071694 - 36071632
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||||| |||||||||||||||||||  ||||||||| |||| | ||||||||||||||||    
T  36071694 aggggcactaaaattattatttttacttgatagttagtactatatagatatatttctttttaa 36071632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 7540550 - 7540513
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagt 62  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  7540550 aggggcatcaaaattattatttttacttattagttagt 7540513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 29118464 - 29118525
Alignment:
Q  26 ggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||||||||||||  || ||||||||| || | | ||||||||||||||||    
T  29118464 ggggcaccaaaattattatttttatgtagtagttagtactacatagatatatttctttttaa 29118525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 25790455 - 25790495
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtatt 65  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  25790455 aggggcaccaaaattattatttttatttaatagttagtatt 25790495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 38087653 - 38087689
Alignment:
Q  27 gggcaccaaaattattatttttacttattagttagta 63  Q
    ||||||||||||||||||||||||||| |||||||||    
T  38087653 gggcaccaaaattattatttttacttaatagttagta 38087689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 43515980 - 43515932
Alignment:
Q  39 tattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||| ||||||||||||||||||||||||| | |||||| |||||||||    
T  43515980 tattttttttacttattagttagtattatatagatatatatctttttaa 43515932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 7853290 - 7853349
Alignment:
Q  28 ggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||| |||||||||||||||| ||||||||| |||| | |||||| || ||||||    
T  7853290 ggcaccaaatttattatttttacttagtagttagtactatatagatatatatccttttaa 7853349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 3643273 - 3643220
Alignment:
Q  33 caaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||| ||||| ||||||||| |||| | ||||||||||||||||    
T  3643273 caaaattattatttt-acttagtagttagtactatatagatatatttctttttaa 3643220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 55147963 - 55147901
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||||||||||||||||| |||| | ||  | | | ||||||||||||||||    
T  55147963 aggggcaccaaaattattatttttacttaatagtcactacaacatagatatatttctttttaa 55147901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 13580495 - 13580433
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  13580495 aggggcaccaaaattattatttttacttaatagttagtattatataaatatatttctttttaa 13580433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 26835731 - 26835669
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||    
T  26835731 aggggcaccaaaattattatttttacttaatagttagtacaatataaatatatttctttttaa 26835669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 28376652 - 28376711
Alignment:
Q  28 ggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||    
T  28376652 ggcaccaaaattattatttttacttagtagttagtactatatagatatatttctttttaa 28376711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 22930313 - 22930375
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||||| ||||||||||| ||||||||| |||| | |||||| |||||||||    
T  22930313 aggggcaccaaaattataatttttacttaatagttagtactatatagatatatatctttttaa 22930375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 34142016 - 34142078
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||| ||||||||||| ||| ||||||||| |||| | ||||||||||||||||    
T  34142016 aggggcaccaaaactattatttttatttagtagttagtactatatagatatatttctttttaa 34142078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 4350805 - 4350755
Alignment:
Q  28 ggcaccaaaattattatttttacttattagttagtattatacaaatatatt 78  Q
    |||||||||||||||||||||| ||| |||||||||||||| | |||||||    
T  4350805 ggcaccaaaattattatttttatttagtagttagtattatatagatatatt 4350755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 13236154 - 13236208
Alignment:
Q  24 aaggggcaccaaaattatta-tttttacttattagttagtattatacaaatatat 77  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||| | ||||||    
T  13236154 aaggggcaccaaaattattattttttacttagtagttagtactatatatatatat 13236208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 32036759 - 32036804
Alignment:
Q  43 atttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    ||||||||||| |||| ||| || ||||||||||||||||||||||    
T  32036759 atttttacttagtagtgagtgttttacaaatatatttctttttaac 32036804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 31383468 - 31383528
Alignment:
Q  27 gggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||| |||||||||||||||| |||| |||||| ||||||| || |||| || |||||||    
T  31383468 gggcatcaaaattattattttttcttaatagttaatattatataagtataattatttttaa 31383528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 39612754 - 39612702
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatat 77  Q
    |||||||  ||||| |||||||||||||| |||||||||||||| | ||||||    
T  39612754 aggggcatgaaaatgattatttttacttactagttagtattatatatatatat 39612702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 21292867 - 21292804
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    ||||||||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||    
T  21292867 aggggcaccaaaattattatttttacttagtagttaatatcatataaatatatttctttttaac 21292804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 9429473 - 9429412
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttcttttta 86  Q
    |||||||||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||    
T  9429473 aggggcaccaaaattagtatttttatttaatagttagtattatataaatatatttcttttta 9429412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 35812606 - 35812668
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||| ||||||||||||||||||||| || |||||| |||| | ||||||||||||||||    
T  35812606 aggggcatcaaaattattatttttacttaataattagtactatatagatatatttctttttaa 35812668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 3940778 - 3940726
Alignment:
Q  35 aaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||||||| |||| ||||| ||| | ||||||||||||||||    
T  3940778 aaattattatttttacttagtagtaagtataatatagatatatttctttttaa 3940726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 30095897 - 30095845
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatat 77  Q
    ||||||||||||||||||||||||||||| |||||| || |||| | ||||||    
T  30095897 aggggcaccaaaattattatttttacttagtagttattaatatatatatatat 30095845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 15134588 - 15134545
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattata 68  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||    
T  15134588 aggggcaccaaaattattatttttacttagtagctagtactata 15134545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 26914472 - 26914437
Alignment:
Q  33 caaaattattatttttacttattagttagtattata 68  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26914472 caaaattattatttttacttagtagttagtattata 26914437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 31329716 - 31329665
Alignment:
Q  33 caaaattattatttttacttattagttagtattatacaaatatatttctttt 84  Q
    ||||||||||||||||||||  || ||||||||||| | |||||||||||||    
T  31329716 caaaattattatttttacttcgtaattagtattatatacatatatttctttt 31329665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 33480627 - 33480569
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttcttt 83  Q
    |||||||||||||||||||||||||  || ||||||||| || | | ||||||||||||    
T  33480627 aggggcaccaaaattattatttttatgtaatagttagtactacatagatatatttcttt 33480569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 40351903 - 40351845
Alignment:
Q  27 gggcaccaaaattattatttttacttattagttagtattatacaaatatatttcttttt 85  Q
    |||||||||| |||||||||||||| | |||||||||||||| | ||||| || |||||    
T  40351903 gggcaccaaagttattatttttactcagtagttagtattatatagatataattattttt 40351845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 37996503 - 37996536
Alignment:
Q  27 gggcaccaaaattattatttttacttattagtta 60  Q
    ||||||||||||||||||||||||||| ||||||    
T  37996503 gggcaccaaaattattatttttacttagtagtta 37996536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 10669015 - 10668956
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttt 84  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||    
T  10669015 aggggcaccaaaattattatttttacttattagttagtattatatagatatatatctttt 10668956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 12174315 - 12174374
Alignment:
Q  28 ggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||    
T  12174315 ggcaccaaaattattatttttacttagtagttagtactatatagatatatttctttttaa 12174374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 9815804 - 9815747
Alignment:
Q  30 caccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||||||||||||||||||||| |||||| || |||| | ||||||||||||||||    
T  9815804 caccaaaattattatttttacttagtagttaatactatatagatatatttctttttaa 9815747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 6274063 - 6274004
Alignment:
Q  30 caccaaaattattatttttacttattagttagtattatacaaatata-tttctttttaac 88  Q
    |||||||||||||||||| ||||| |||||||||||||| | ||||| ||||||||||||    
T  6274063 caccaaaattattattttaacttagtagttagtattatatacatatattttctttttaac 6274004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 34969390 - 34969450
Alignment:
Q  27 gggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||| ||||||||||||||||||||| ||||| ||| |||| | |||||||| |||||||    
T  34969390 gggcatcaaaattattatttttacttagtagttggtactatatagatatatttatttttaa 34969450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 33344788 - 33344823
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagtta 60  Q
    ||||||||||||||||||||||||||||| ||||||    
T  33344788 aggggcaccaaaattattatttttacttagtagtta 33344823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 35122088 - 35122053
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagtta 60  Q
    ||||||||||||||||||||||||||||| ||||||    
T  35122088 aggggcaccaaaattattatttttacttagtagtta 35122053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 4338026 - 4337976
Alignment:
Q  27 gggcaccaaaattattatttttacttattagttagtattatacaaatatat 77  Q
    ||||||||||||||||| ||||||||| ||||||||| |||| | ||||||    
T  4338026 gggcaccaaaattattacttttacttagtagttagtactatatatatatat 4337976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 40877062 - 40876999
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    |||| |||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||    
T  40877062 agggacaccaaaattattatttttacttggtagttagtattatataaatatatttctttttaac 40876999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 5163784 - 5163846
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||| |||||||| |||||||||    
T  5163784 aggggcatcaaaattattatttttacttagtagttagtactatataaatatatatctttttaa 5163846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 38035445 - 38035395
Alignment:
Q  34 aaaattattatttttacttattagttagtattatacaaatatatttctttt 84  Q
    |||||||||||||||||| |||||||||||||| |  ||||||||||||||    
T  38035445 aaaattattatttttactcattagttagtattaaattaatatatttctttt 38035395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 4206699 - 4206647
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatat 77  Q
    |||||||||||||||||||| |||||||| ||||||||| |||| | ||||||    
T  4206699 aggggcaccaaaattattatatttacttagtagttagtaatatatatatatat 4206647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 18197333 - 18197392
Alignment:
Q  28 ggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    |||| ||||||||||||||||||||  |||||||||||||  | |||||||||||||||||    
T  18197333 ggcatcaaaattattatttttacttgatagttagtattat-tacatatatttctttttaac 18197392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 17271400 - 17271348
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatat 77  Q
    ||||| ||||||||||||||||||||||| |||| ||||| ||| | ||||||    
T  17271400 aggggtaccaaaattattatttttacttagtagtcagtataatatagatatat 17271348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 34909476 - 34909424
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatat 77  Q
    |||||||  |||||||||||||||||||| ||||||||| |||| | ||||||    
T  34909476 aggggcattaaaattattatttttacttactagttagtaatatatatatatat 34909424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 1240419 - 1240481
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||||| |||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  1240419 aggggcactaaaattattatttttacttagtagttagtactatataaatatatttctttttaa 1240481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 8246854 - 8246795
Alignment:
Q  28 ggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||    
T  8246854 ggcaccaaaattattatttttacttaatagttagtactatatagatatatttctttttaa 8246795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 3265596 - 3265539
Alignment:
Q  31 accaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    ||||||||||||||||||||||| |||||||||||| | | |||||||||||||||||    
T  3265596 accaaaattattatttttacttaatagttagtattaaatagatatatttctttttaac 3265539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 33735885 - 33735825
Alignment:
Q  27 gggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||| |||||||||| |||||  || ||||||||||| || ||||||||||||||||||    
T  33735885 gggcactaaaattattaattttatctagtagttagtattgtataaatatatttctttttaa 33735825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 23898032 - 23897989
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattata 68  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||||    
T  23898032 aggggcaccaaaattatcatttttacttagtagttagtaatata 23897989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 1153860 - 1153798
Alignment:
Q  26 ggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    ||||||||| |||||||||||||| ||| |||||||||||| | |  ||||||| ||||||||    
T  1153860 ggggcaccacaattattatttttatttagtagttagtattaaatagttatatttgtttttaac 1153798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 35204344 - 35204298
Alignment:
Q  33 caaaattattatttttacttattagttagtattatacaaatatattt 79  Q
    ||||||||||||||||||||| || ||||||||||| ||| ||||||    
T  35204344 caaaattattatttttacttagtaattagtattatataaaaatattt 35204298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 29664192 - 29664245
Alignment:
Q  34 aaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||||||||||||||||| || |||||| |||| |  |||||||||||||||    
T  29664192 aaaattattatttttacttagtaattagtactatataggtatatttctttttaa 29664245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 35405315 - 35405343
Alignment:
Q  25 aggggcaccaaaattattatttttactta 53  Q
    |||||||||||||||||||||||||||||    
T  35405315 aggggcaccaaaattattatttttactta 35405343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 45385374 - 45385310
Alignment:
Q  24 aaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    |||||| | ||||||||||||||||| ||| ||||| |||||| |   |||||||||||||||||    
T  45385374 aaggggtatcaaaattattatttttatttagtagtttgtattaaatggatatatttctttttaac 45385310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 7887324 - 7887264
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttcttttt 85  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| | |||| |||||||||    
T  7887324 aggggcaccaaaattattatttttacttagtagttagtactatatagatatgtttcttttt 7887264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 502796 - 502859
Alignment:
Q  24 aaggggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    |||| ||| |||||||||||||||||||||  ||||||||||||| | |||||||||||||||||    
T  502796 aaggtgcatcaaaattattatttttacttag-agttagtattatatagatatatttctttttaac 502859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 16570630 - 16570571
Alignment:
Q  28 ggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||| ||||||||||||||||||||||||||| |||  ||| | ||||||||||||||||    
T  16570630 ggcatcaaaattattatttttacttattagttggtaccatatagatatatttctttttaa 16570571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 10325769 - 10325717
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatat 77  Q
    ||||||||||||||||||||||||||||| | ||||||| |||| | ||||||    
T  10325769 aggggcaccaaaattattatttttacttagttgttagtactatatatatatat 10325717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 12263785 - 12263725
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatatttcttttt 85  Q
    ||||||||||||||||||||||||||||| | ||||||| |||| | |||| ||| |||||    
T  12263785 aggggcaccaaaattattatttttacttaatggttagtactatatagatattttttttttt 12263725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 16569429 - 16569374
Alignment:
Q  33 caaaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    ||||||||||||||||||||| ||| || ||||||| |  ||||||||||||||||    
T  16569429 caaaattattatttttacttagtaggtaatattatataggtatatttctttttaac 16569374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 32257814 - 32257760
Alignment:
Q  33 caaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||| |||||||||||||| |||||||||||| | | |||||||| |||||||    
T  32257814 caaaataattatttttacttagtagttagtattacatagatatatttttttttaa 32257760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 3193657 - 3193597
Alignment:
Q  27 gggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||||||||||||||||||||  || ||| ||||| || | | ||||||||||||||||    
T  3193657 gggcaccaaaattattatttttatgtagtaggtagtactacatagatatatttctttttaa 3193597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 39542402 - 39542454
Alignment:
Q  25 aggggcaccaaaattattatttttacttattagttagtattatacaaatatat 77  Q
    ||||||| |||||||||||||||||| || ||||||||| ||||  |||||||    
T  39542402 aggggcatcaaaattattatttttacgtagtagttagtactatatgaatatat 39542454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 2758070 - 2758130
Alignment:
Q  28 ggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    |||||||||||||||||||||| ||| ||||||||| |||| ||| |||||||||||||||    
T  2758070 ggcaccaaaattattatttttaattagtagttagtactatataaacatatttctttttaac 2758130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 11383585 - 11383635
Alignment:
Q  27 gggcaccaaaattattatttttacttattagttagtattatacaaatatat 77  Q
    ||||||||||||||||||||||| ||| ||||||||| |||| | ||||||    
T  11383585 gggcaccaaaattattatttttatttagtagttagtaatatatatatatat 11383635  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 33510226 - 33510172
Alignment:
Q  33 caaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||||||||| ||||||||  || | | ||||||||||||||||    
T  33510226 caaaattattatttttacttagtagttagtgctacatagatatatttctttttaa 33510172  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 15670919 - 15670972
Alignment:
Q  34 aaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    |||||||||||||||||||| |||||| ||  ||| | ||||||||||||||||    
T  15670919 aaaattattatttttacttagtagttattacaatatagatatatttctttttaa 15670972  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 8266729 - 8266689
Alignment:
Q  28 ggcaccaaaattattatttttacttattagttagtattata 68  Q
    |||||||||||||| |||||||| || ||||||||||||||    
T  8266729 ggcaccaaaattatgatttttacgtaatagttagtattata 8266689  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 18258015 - 18257971
Alignment:
Q  33 caaaattattatttttacttattagttagtattatacaaatatat 77  Q
    |||| |||||||||||||||| |||||||||||||| | ||||||    
T  18258015 caaatttattatttttacttaatagttagtattatatacatatat 18257971  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 19149985 - 19149925
Alignment:
Q  27 gggcaccaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||| ||||||| ||||||||| ||| |||||| || | || ||||||||||||||||||    
T  19149985 gggcatcaaaatttttatttttatttaatagttaataatttataaatatatttctttttaa 19149925  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 42417929 - 42417977
Alignment:
Q  36 aattattatttttacttattagttagtattatacaaatatatttctttt 84  Q
    |||||||||||||||||| |||||| || |||| |||||||||| ||||    
T  42417929 aattattatttttacttagtagttaatactatataaatatatttgtttt 42417977  T

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Target: scaffold0531 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 9699 - 9755
Alignment:
Q  31 accaaaattattatttttacttattagttagtattatacaaatatatttctttttaa 87  Q
    ||||||||||||||||||| ||| ||||||||| |||| | |||||| |||||||||    
T  9699 accaaaattattatttttatttagtagttagtactatatagatatatatctttttaa 9755  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 18557 - 18610
Alignment:
Q  35 aaattattatttttacttattagttagtattatacaaatatatttctttttaac 88  Q
    |||||| |||||||||||||||||||||  |||| | || ||||||||||||||    
T  18557 aaattaatatttttacttattagttagtggtatatacatgtatttctttttaac 18610  T

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