View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10621_low_42 (Length: 217)

Name: NF10621_low_42
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10621_low_42
NF10621_low_42
[»] chr8 (8 HSPs)
chr8 (1-166)||(38308323-38308488)
chr8 (63-157)||(38325225-38325319)
chr8 (63-150)||(38316380-38316467)
chr8 (85-150)||(38305674-38305739)
chr8 (91-150)||(38299761-38299820)
chr8 (174-202)||(38308528-38308556)
chr8 (101-150)||(38313005-38313058)
chr8 (101-149)||(38320516-38320564)
[»] chr4 (1 HSPs)
chr4 (63-150)||(38850878-38850965)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 4e-77; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 38308323 - 38308488
Alignment:
Q  1 tttgcccaaacaaaatattctctgattttcctccactcttttactcattaagtctttattattttgtacacggaagacaaacataagctcaaacaacaac 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38308323 tttgcccaaacaaaatattctctgattttcctctactcttttactcattaagtctttattattttgtacacggaagagaaacataagctcaaacaacaac 38308422  T
Q  101 tggctaccattcctaataagatatctttaacctttgagttgtgggaatcttgtactattgacactt 166  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  38308423 tggctaccattccttataagatatctttaacctttgagttgtgggaatcttgtactactggcactt 38308488  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 38325225 - 38325319
Alignment:
Q  63 tttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatcttgtacta 157  Q
    |||||||| | |||| |||  |||||| ||||||||| |||||||||||||||||| | |||||||||| ||||| |||||||||||||| ||||    
T  38325225 tttgtacatgaaagagaaatctaagcttaaacaacaattggctaccattcctaatagggtatctttaacttttgatttgtgggaatcttgcacta 38325319  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 38316380 - 38316467
Alignment:
Q  63 tttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatct 150  Q
    |||||||||| |||| ||||  ||||| |||||| || |||||| ||||||||||| |||||||||||| ||||| ||||||||||||    
T  38316380 tttgtacacgaaagagaaactaaagcttaaacaagaattggctagcattcctaataggatatctttaacttttgatttgtgggaatct 38316467  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 38305674 - 38305739
Alignment:
Q  85 aagctcaaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatct 150  Q
    ||||| |||||| || |||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  38305674 aagcttaaacaagaattggctaccattcctaataggatatctttaacttttgatttgtgggaatct 38305739  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 38299761 - 38299820
Alignment:
Q  91 aaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatct 150  Q
    |||||||| |||||||| |||||||||| |||||||||||| |||||  |||||||||||    
T  38299761 aaacaacagctggctactattcctaataggatatctttaacttttgatctgtgggaatct 38299820  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 38308528 - 38308556
Alignment:
Q  174 agttaaatagtaagcttttcaatttctgt 202  Q
    |||||||||||||||||||||||||||||    
T  38308528 agttaaatagtaagcttttcaatttctgt 38308556  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 38313005 - 38313058
Alignment:
Q  101 tggctaccattcctaataa----gatatctttaacctttgagttgtgggaatct 150  Q
    |||||||||||||||||||    |||||||||||| ||||| ||||||||||||    
T  38313005 tggctaccattcctaataaataggatatctttaacttttgatttgtgggaatct 38313058  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 38320516 - 38320564
Alignment:
Q  101 tggctaccattcctaataagatatctttaacctttgagttgtgggaatc 149  Q
    |||||||||||||||||| ||||||||||||  ||||  ||||||||||    
T  38320516 tggctaccattcctaataggatatctttaactgttgatctgtgggaatc 38320564  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 38850965 - 38850878
Alignment:
Q  63 tttgtacacggaagacaaacataagctcaaacaacaactggctaccattcctaataagatatctttaacctttgagttgtgggaatct 150  Q
    |||||||||| |||| |||| |||||| ||||||||| |  ||||||||||||||| |||||||||| | ||||| ||||||||||||    
T  38850965 tttgtacacgaaagagaaacctaagcttaaacaacaattaactaccattcctaataggatatctttatcttttgatttgtgggaatct 38850878  T

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