View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_43 (Length: 217)
Name: NF10621_low_43
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 8453169 - 8453368
Alignment:
| Q |
1 |
ataaagttcgcataaatcacctggaggaggcggacttcaattgcaggtgtactagaaatagttcgtgccatatgttgtaaccttttatgcataagaacat |
100 |
Q |
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| T |
8453169 |
ataaagttcgcataaatcacctggaggaggcggacttcaattgcaggtgtactagaaatagttcgtgccatatgttgtaaccttttatgcataagaacat |
8453268 |
T |
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| Q |
101 |
ctttggccttctcaacattcatttccagtgcatacctagttggaaggctattgaagtgcccccaaagctcatcttcaaaataaggaagtgtggcctctga |
200 |
Q |
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| T |
8453269 |
ctttggccttctcaacattcatttccagtgcatacctagttggaaggctattgaagtgcccccaaagctcatcttcaaaataaggaagtgtggcctctga |
8453368 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 53664042 - 53664103
Alignment:
| Q |
77 |
gtaaccttttatgcataagaacatctttggccttctcaacattcatttccagtgcataccta |
138 |
Q |
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| T |
53664042 |
gtaaccttttatgcataaggacatattgagccctctccacattcatatccaatgcataccta |
53664103 |
T |
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