View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10621_low_5 (Length: 370)
Name: NF10621_low_5
Description: NF10621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10621_low_5 |
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| [»] scaffold0187 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 37881948 - 37882283
Alignment:
| Q |
19 |
gtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtctataatttaattcta |
117 |
Q |
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| T |
37881948 |
gtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatctttcaagtttattctttcttcatgtctataatttaattcta |
37882047 |
T |
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| Q |
118 |
atttagagaacagtgcaaagtattcggataaaatgttccactcgtaagttacnnnnnnnnnnngctaaggaacttcagtaaagagatcatagttatcaaa |
217 |
Q |
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| T |
37882048 |
atttagagaacagtgcaaagtattcggataaagtgttccactcgtaagttactttttttt---gctaaggaacttcagtaaagagatcatagttatcaaa |
37882144 |
T |
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| Q |
218 |
acacagattgtggttgcgaacttgcagtggtggatgcagtcatgaccgctactattgtgattatgaacaatgtggctgttgtaatgtgtactgcaacgtg |
317 |
Q |
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| T |
37882145 |
acacagattgtggttgcgaacttgcagtggtggatgcagtcatgaccgctactattgtgattatgaacaatgtggctgttgtaatgtgtactgcaacgtg |
37882244 |
T |
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| Q |
318 |
aaatactatatctcctctcttcctccaaaatctcctgcc |
356 |
Q |
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| T |
37882245 |
aaatactatatctcctctcctcttccaaaatctcctgcc |
37882283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 37911897 - 37911958
Alignment:
| Q |
19 |
gtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt |
80 |
Q |
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| T |
37911897 |
gtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataatcttt |
37911958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 6526 - 6441
Alignment:
| Q |
19 |
gtaattagttattgattatcatttgtgaactatgccaattaatgtaaatatgaataatcttt-aagtttattctttcttcatgtct |
103 |
Q |
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| T |
6526 |
gtaattagttattgattatcatttgtgaaccatgccaagtaatgtaaatatgaataacctttcaagtttattctctcttcacgtct |
6441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 6314 - 6264
Alignment:
| Q |
247 |
gtggatgcagtcatgaccgctactattgtgattatgaacaatgtggctgtt |
297 |
Q |
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| T |
6314 |
gtggttgcaatcaagaccgctactattgtgattatgaacattgtggttgtt |
6264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 142
Target Start/End: Complemental strand, 6424 - 6387
Alignment:
| Q |
105 |
taatttaattctaatttagagaacagtgcaaagtattc |
142 |
Q |
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| T |
6424 |
taatttagttttaatttagagaacagtgcaaagtattc |
6387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 27170 - 27093
Alignment:
| Q |
28 |
tattgattatcatttgtgaactatgccaattaatg-taaatatgaataatcttt-aagtttattctttcttcatgtct |
103 |
Q |
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| T |
27170 |
tattgattatcatttgtaaactatgataattaatgtttaatatgaataatatttcatgtttattctctcttaatgtct |
27093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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